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Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

12,984,667

SARS-CoV-2 (hCoV-19) genomes

October 05, 2022

10:28 PM ET

Last data update

Top Lineages Per Country (Past 12 Weeks)

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Lineage WHO Label Country Percent Lineage Count Total Count
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Russia 70% 5,997 8,520
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Crimea 65% 100 154
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Spain 45% 2,408 5,296
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Turkey 44% 963 2,192
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Portugal 42% 930 2,219
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Montenegro 35% 24 68
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bulgaria 34% 34 100
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Finland 33% 380 1,136
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 32% 1,258 3,957
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France 32% 6,149 19,487
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovenia 31% 740 2,352
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Romania 29% 294 1,005
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Netherlands 29% 2,225 7,664
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Estonia 29% 176 609
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Italy 29% 1,743 6,060
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Croatia 27% 703 2,582
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Norway 27% 531 1,990
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 26% 751 2,901
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 26% 745 2,901
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Switzerland 25% 943 3,730
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Estonia 25% 153 609
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Switzerland 25% 931 3,730
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Greece 25% 283 1,142
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 25% 2,029 8,199
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovakia 25% 814 3,297
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iceland 25% 213 869
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sweden 24% 2,512 10,353
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 24% 9,237 38,233
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sweden 24% 2,494 10,353
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Finland 24% 269 1,136
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 24% 30 127
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iceland 24% 205 869
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Romania 23% 236 1,005
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Romania 23% 235 1,005
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ireland 23% 838 3,584
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Croatia 23% 600 2,582
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Czechia 23% 849 3,658
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Norway 23% 460 1,990
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Greece 23% 263 1,142
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 23% 6,923 30,271
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Turkey 23% 500 2,192
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovenia 23% 532 2,352
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United Kingdom 22% 8,093 36,045
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 22% 6,764 30,271
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Czechia 22% 815 3,658
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Montenegro 22% 15 68
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ireland 22% 787 3,584
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 22% 8,313 38,233
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United Kingdom 22% 7,755 36,045
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Crimea 21% 33 154
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France 21% 4,155 19,487
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 21% 27 127
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iceland 21% 181 869
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Austria 20% 761 3,769
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Italy 19% 1,172 6,060
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Greece 19% 217 1,142
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bulgaria 19% 19 100
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Liechtenstein 19% 33 175
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovakia 19% 618 3,297
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Netherlands 19% 1,434 7,664
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 18% 729 3,957
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Liechtenstein 18% 32 175
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 18% 1,496 8,199
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Portugal 18% 399 2,219
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Czechia 18% 645 3,658
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sweden 17% 1,794 10,353
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 17% 22 127
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Norway 17% 344 1,990
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Estonia 17% 105 609
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 17% 5,170 30,271
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Italy 16% 993 6,060
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Finland 16% 184 1,136
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ireland 16% 579 3,584
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Austria 16% 599 3,769
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 16% 1,297 8,199
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Switzerland 16% 587 3,730
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovakia 16% 516 3,297
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 16% 618 3,957
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovenia 15% 364 2,352
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United Kingdom 15% 5,533 36,045
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 15% 5,633 38,233
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Croatia 15% 380 2,582
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Montenegro 15% 10 68
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 14% 1,164 8,199
BF.14BF.14 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, N450D, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Austria 14% 535 3,769
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France 14% 2,737 19,487
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 13% 389 2,901
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Spain 13% 687 5,296
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Netherlands 13% 966 7,664
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Spain 13% 665 5,296
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 12% 4,757 38,233
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Portugal 12% 273 2,219
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Liechtenstein 12% 21 175
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Turkey 11% 252 2,192
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Slovakia 11% 370 3,297
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 10% 302 2,901
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Bulgaria 10% 10 100
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bulgaria 10% 10 100
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Dominican Republic 76% 250 329
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Panama 73% 151 207
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mexico 29% 1,352 4,606
BE.1BE.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 29% 343 1,187
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Canada 26% 6,447 24,805
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United States 26% 55,531 215,393
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron U.S. Virgin Islands 24% 19 80
BA.5.5BA.5.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 22% 41 184
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Puerto Rico 22% 112 516
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Martinique 22% 11 51
BA.5.2.2BA.5.2.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Martinique 20% 10 51
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Canada 19% 4,729 24,805
BA.4.4BA.4.4 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 18% 212 1,187
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron U.S. Virgin Islands 18% 14 80
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 17% 31 184
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mexico 16% 744 4,606
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United States 15% 32,599 215,393
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Canada 15% 3,708 24,805
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Martinique 14% 7 51
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Martinique 14% 7 51
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Martinique 14% 7 51
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Puerto Rico 14% 70 516
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mexico 13% 606 4,606
BA.4BA.4 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (57%), N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 12% 23 184
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 12% 147 1,187
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United States 12% 26,117 215,393
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 11% 21 184
BA.5.1.6BA.5.1.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mexico 11% 524 4,606
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron U.S. Virgin Islands 11% 9 80
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron U.S. Virgin Islands 11% 9 80
BE.1.2BE.1.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 10% 120 1,187
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron U.S. Virgin Islands 10% 8 80
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mongolia 78% 69 88
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indonesia 78% 3,610 4,636
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iran 77% 127 166
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pakistan 73% 261 358
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Philippines 70% 369 526
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Malaysia 69% 1,285 1,857
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Thailand 68% 838 1,229
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Cambodia 59% 165 278
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Korea 52% 5,291 10,111
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vietnam 49% 317 643
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nepal 46% 26 57
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 41% 65 158
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 41% 138 336
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brunei 39% 339 865
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brunei 39% 337 865
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Japan 39% 15,607 40,414
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Singapore 37% 1,225 3,304
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron India 35% 2,335 6,761
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sri Lanka 33% 29 87
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sri Lanka 28% 24 87
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Korea 27% 2,736 10,111
BA.2BA.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bangladesh 26% 20 76
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Israel 24% 3,408 14,122
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Japan 24% 9,721 40,414
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vietnam 23% 146 643
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Israel 22% 3,074 14,122
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 18% 62 336
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Japan 18% 7,278 40,414
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sri Lanka 17% 15 87
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 17% 27 158
BF.15BF.15 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D (89%), V213G, Y248H, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sri Lanka 16% 14 87
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Israel 16% 2,270 14,122
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 15% 24 158
BJ.1BJ.1 Mutations
ProteinMutations
Spike (RBD)G339H, R346T, L368I (60%), S371F (56%), D405N (72%), R408S (59%), K417N (51%), N440K (76%), V445P (71%), G446S (73%), S477N (87%), T478K (86%), V483A (85%), E484A (86%), F490V (86%), Q493R (86%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, V83A, G142D, Y144-, H146Q, Q183E, V213E, D614G, H655Y, N679K, P681H, N764K, D796Y, G798D, Q954H, N969K, S1003I
NA Bangladesh 14% 11 76
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bangladesh 14% 11 76
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 14% 48 336
BA.2.76BA.2.76 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (67%), S477N (79%), T478K (79%), E484A (78%), Q493R (75%), Q498R (75%), N501Y (77%), Y505H (78%)
Spike (non-RBD)T19I, L24- (69%), P25- (70%), P26- (70%), A27S (71%), G142D, V213G, Y248N, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nepal 14% 8 57
BA.2.38.1BA.2.38.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F (73%), S373P (71%), S375F (69%), T376A (68%), D405N (81%), R408S (72%), K417T (55%), N440K (55%), K444N (57%), S477N (61%), T478K (61%), E484A (60%), Q493R (55%), Q498R (58%), N501Y (62%), Y505H (60%)
Spike (non-RBD)T19I, L24- (65%), P25- (65%), P26- (65%), A27S (68%), G142D, V213G, S247N, Y248S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nepal 14% 8 57
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Brunei 14% 121 865
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Singapore 14% 454 3,304
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Israel 14% 1,913 14,122
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 13% 45 336
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iran 13% 22 166
BA.5.3.1BA.5.3.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bangladesh 13% 10 76
BA.2BA.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron India 13% 866 6,761
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Georgia 13% 20 158
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mongolia 12% 11 88
BA.2.75.1BA.2.75.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H (85%), S371F (80%), S373P (80%), S375F (79%), T376A (79%), D405N (84%), R408S (77%), K417N (76%), N440K (82%), G446S (83%), N460K (86%), S477N (86%), T478K (86%), E484A (86%), Q498R (80%), N501Y (81%), Y505H (80%)
Spike (non-RBD)T19I, L24- (81%), P25- (81%), P26- (81%), A27S (83%), G142D (63%), K147E (73%), W152R (75%), F157L (76%), I210V (78%), V213G (78%), G257S (86%), D574V, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron India 12% 830 6,761
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Singapore 12% 380 3,304
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Philippines 10% 53 526
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kiribati 76% 58 76
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Northern Mariana Islands 65% 98 151
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Australia 30% 4,340 14,275
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Australia 27% 3,864 14,275
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Zealand 26% 702 2,651
BA.1.17.2BA.1.17.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371L (88%), S373P (89%), S375F (89%), K417N (58%), N440K (58%), G446S (59%), S477N, T478K, E484A, Q493R, G496S (87%), Q498R (86%), N501Y (87%), Y505H (87%)
Spike (non-RBD)A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (90%), L212I (90%), ins214EPE (84%), T547K, D614G, H655Y, N679K, P681H, A701V, N764K (84%), D796Y, N856K, Q954H, N969K, L981F
Omicron Kiribati 24% 18 76
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Zealand 24% 626 2,651
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Zealand 15% 403 2,651
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Northern Mariana Islands 14% 21 151
BA.5.5BA.5.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Northern Mariana Islands 11% 17 151
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brazil 52% 1,120 2,145
BA.5.2.2BA.5.2.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron French Guiana 48% 38 80
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bonaire 43% 50 115
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Curacao 35% 25 72
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 31% 193 617
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ecuador 30% 294 968
BA.4.1BA.4.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (86%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Chile 29% 877 2,975
BA.4.1BA.4.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (86%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colombia 29% 86 292
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Argentina 29% 145 502
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Peru 27% 767 2,887
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bonaire 25% 29 115
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Chile 24% 700 2,975
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Aruba 23% 42 182
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brazil 22% 482 2,145
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron French Guiana 19% 15 80
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Argentina 17% 87 502
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colombia 16% 48 292
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ecuador 16% 156 968
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Aruba 16% 29 182
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 16% 98 617
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Curacao 15% 11 72
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Peru 14% 402 2,887
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 13% 80 617
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Chile 12% 360 2,975
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colombia 12% 34 292
BF.10BF.10 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 11% 70 617
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron French Guiana 11% 9 80
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Curacao 11% 8 72
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Aruba 11% 20 182
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Peru 11% 310 2,887
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colombia 10% 30 292
BA.4.1BA.4.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (86%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Argentina 10% 51 502
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nigeria 87% 97 111
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Gambia 72% 52 72
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France (Réunion Island) 37% 265 715
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Africa 19% 73 394
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France (Réunion Island) 18% 132 715
BE.1BE.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mauritius 18% 91 519
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mauritius 17% 88 519
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mauritius 17% 86 519
BA.5BA.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (87%), K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mauritius 13% 69 519
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Africa 12% 46 394
BA.5.3.1BA.5.3.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Africa 11% 43 394
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France (Réunion Island) 11% 76 715
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label State Percent Lineage Count Total Count
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Idaho 36% 211 582
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nevada 36% 613 1,719
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Mexico 34% 321 935
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Dakota 33% 111 341
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Oklahoma 32% 79 250
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Oregon 31% 492 1,572
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nebraska 31% 497 1,623
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Alaska 31% 176 575
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron California 30% 12,227 40,355
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Washington 30% 2,196 7,280
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Utah 30% 1,700 5,749
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Wisconsin 28% 699 2,459
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Montana 28% 42 149
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colorado 28% 1,537 5,478
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hawaii 28% 496 1,775
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Arizona 28% 1,094 3,971
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Louisiana 27% 682 2,505
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iowa 27% 412 1,516
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ohio 27% 979 3,618
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Minnesota 26% 888 3,361
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Hampshire 26% 117 447
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Connecticut 26% 942 3,601
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kentucky 26% 371 1,421
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Maryland 26% 1,172 4,586
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Carolina 25% 369 1,468
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kansas 25% 355 1,432
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron North Carolina 25% 2,372 9,592
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Jersey 25% 1,992 8,081
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Delaware 24% 317 1,299
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New York 24% 4,752 19,511
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron District of Columbia 24% 345 1,422
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron North Dakota 24% 323 1,334
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Virginia 24% 1,785 7,386
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Wyoming 24% 94 392
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Rhode Island 24% 376 1,580
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Illinois 24% 1,989 8,440
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pennsylvania 23% 1,359 5,857
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mississippi 23% 197 857
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Missouri 23% 341 1,487
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Arkansas 23% 199 871
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron West Virginia 23% 249 1,097
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Texas 22% 4,254 19,130
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Michigan 22% 1,341 6,070
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Maine 22% 43 200
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Florida 21% 1,729 8,225
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Massachusetts 21% 955 4,545
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Tennessee 21% 146 695
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indiana 20% 614 3,142
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 19% 827 4,393
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vermont 18% 26 143
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Alabama 15% 128 848
*Criteria: Minimum of 20 samples per state.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bulgaria 2022-08-08 28% -> 54% (+27%) 21 / 76 13 / 24
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ireland 2022-09-19 13% -> 30% (+16%) 25 / 188 8 / 27
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iceland 2022-08-22 21% -> 35% (+14%) 35 / 166 52 / 147
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Slovakia 2022-09-19 7% -> 21% (+14%) 24 / 343 15 / 72
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Romania 2022-08-22 20% -> 33% (+13%) 60 / 305 53 / 162
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Liechtenstein 2022-09-05 11% -> 24% (+13%) 5 / 45 11 / 46
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Estonia 2022-08-22 23% -> 35% (+11%) 65 / 278 82 / 236
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Turkey 2022-08-22 44% -> 55% (+11%) 301 / 689 167 / 306
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Portugal 2022-09-19 20% -> 30% (+10%) 115 / 562 38 / 125
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Greece 2022-08-22 18% -> 27% (+9%) 71 / 392 29 / 107
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Czechia 2022-08-08 14% -> 23% (+9%) 164 / 1,172 271 / 1,190
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Austria 2022-09-19 7% -> 14% (+7%) 56 / 837 52 / 376
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Spain 2022-09-05 2% -> 9% (+7%) 16 / 766 30 / 328
BE.1BE.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Finland 2022-09-05 5% -> 12% (+7%) 14 / 257 6 / 48
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Norway 2022-08-22 21% -> 28% (+6%) 140 / 655 109 / 392
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovenia 2022-09-05 13% -> 20% (+6%) 56 / 423 68 / 348
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 2022-08-08 20% -> 26% (+6%) 12 / 59 18 / 68
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 2022-09-19 5% -> 11% (+5%) 444 / 8,737 48 / 455
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United Kingdom 2022-09-19 6% -> 11% (+5%) 316 / 5,212 255 / 2,277
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 2022-09-19 18% -> 23% (+5%) 266 / 1,445 170 / 725
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Netherlands 2022-09-19 1% -> 6% (+5%) 17 / 1,511 10 / 170
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 2022-09-05 4% -> 8% (+4%) 209 / 5,672 565 / 6,935
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 2022-09-19 3% -> 7% (+4%) 13 / 479 14 / 215
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Italy 2022-09-05 1% -> 5% (+3%) 10 / 820 57 / 1,226
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Croatia 2022-08-08 1% -> 3% (+2%) 5 / 783 21 / 689
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 2022-08-08 0% -> 3% (+2%) 6 / 1,355 35 / 1,266
BA.5.1.5BA.5.1.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, P1263Q
Omicron Switzerland 2022-09-05 0% -> 2% (+2%) 3 / 880 20 / 831
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sweden 2022-08-08 1% -> 3% (+2%) 22 / 2,874 73 / 2,775
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Russia 2022-09-05 1% -> 2% (+2%) 15 / 2,035 7 / 284
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron U.S. Virgin Islands 2022-08-08 5% -> 29% (+23%) 3 / 59 6 / 21
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 2022-08-08 6% -> 16% (+10%) 5 / 85 16 / 99
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 2022-09-19 17% -> 27% (+10%) 34 / 195 30 / 110
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Dominican Republic 2022-09-05 76% -> 85% (+10%) 62 / 82 69 / 81
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mexico 2022-09-05 20% -> 29% (+9%) 165 / 828 57 / 197
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Puerto Rico 2022-08-08 20% -> 28% (+8%) 64 / 317 43 / 155
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.2.10BA.2.10 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (80%), S477N (88%), T478K (88%), E484A (88%), Q493R (83%), Q498R (85%), N501Y (86%), Y505H (87%)
Spike (non-RBD)T19I, L24- (87%), P25- (87%), P26- (87%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron India 2022-09-19 4% -> 48% (+44%) 23 / 517 14 / 29
BA.2BA.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bangladesh 2022-09-05 5% -> 28% (+23%) 1 / 20 9 / 32
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Singapore 2022-09-05 6% -> 28% (+22%) 40 / 674 192 / 694
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brunei 2022-08-22 31% -> 50% (+19%) 94 / 305 76 / 153
BA.5.2.6BA.5.2.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indonesia 2022-09-19 8% -> 26% (+18%) 50 / 618 11 / 42
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 2022-08-08 33% -> 51% (+18%) 24 / 72 28 / 55
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vietnam 2022-08-08 44% -> 57% (+13%) 163 / 367 106 / 185
BA.5.2.7BA.5.2.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444M, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pakistan 2022-08-22 3% -> 14% (+11%) 3 / 116 15 / 109
BA.5.2.6BA.5.2.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Cambodia 2022-09-05 5% -> 15% (+10%) 3 / 61 6 / 40
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 2022-09-19 41% -> 50% (+9%) 50 / 121 13 / 26
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mongolia 2022-08-08 70% -> 79% (+8%) 19 / 27 37 / 47
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Philippines 2022-08-08 67% -> 75% (+8%) 202 / 300 136 / 181
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Korea 2022-08-08 48% -> 55% (+7%) 1,157 / 2,422 1,719 / 3,132
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Thailand 2022-09-05 2% -> 9% (+7%) 4 / 222 6 / 70
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Israel 2022-08-08 19% -> 25% (+6%) 1,340 / 7,031 741 / 2,984
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Malaysia 2022-08-08 2% -> 6% (+4%) 20 / 963 38 / 601
BA.5.2.6BA.5.2.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Japan 2022-09-19 0% -> 3% (+3%) 9 / 4,154 5 / 172
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.5.5BA.5.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Northern Mariana Islands 2022-08-08 8% -> 21% (+13%) 9 / 113 8 / 38
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Australia 2022-09-05 2% -> 5% (+3%) 68 / 3,152 129 / 2,494
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Aruba 2022-08-22 16% -> 38% (+22%) 15 / 95 12 / 32
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bonaire 2022-08-08 15% -> 35% (+20%) 4 / 26 18 / 51
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Argentina 2022-08-22 34% -> 53% (+19%) 62 / 181 16 / 30
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Peru 2022-09-05 12% -> 29% (+17%) 111 / 917 17 / 59
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 2022-09-05 12% -> 26% (+14%) 15 / 126 17 / 65
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron French Guiana 2022-08-08 11% -> 21% (+10%) 4 / 36 5 / 24
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colombia 2022-08-08 9% -> 17% (+7%) 21 / 227 9 / 54
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ecuador 2022-08-22 18% -> 25% (+7%) 70 / 388 19 / 77
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Chile 2022-09-05 25% -> 31% (+6%) 192 / 770 133 / 433
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.5.3BA.5.3 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (83%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Africa 2022-08-22 2% -> 13% (+11%) 3 / 130 12 / 93
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mauritius 2022-08-08 13% -> 23% (+10%) 42 / 315 39 / 168
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nigeria 2022-08-22 81% -> 89% (+8%) 25 / 31 40 / 45
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France (Réunion Island) 2022-09-05 10% -> 16% (+6%) 33 / 327 13 / 81
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label State 2-Week Period Change Previous Support Current Support
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vermont 2022-09-05 5% -> 40% (+35%) 2 / 41 8 / 20
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Maine 2022-08-08 9% -> 32% (+23%) 5 / 54 13 / 40
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Washington 2022-09-19 29% -> 45% (+16%) 184 / 630 18 / 40
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iowa 2022-08-08 21% -> 36% (+15%) 100 / 474 143 / 400
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kentucky 2022-09-19 10% -> 24% (+13%) 20 / 197 8 / 34
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Idaho 2022-09-05 15% -> 26% (+12%) 22 / 151 18 / 69
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Hampshire 2022-08-08 18% -> 29% (+11%) 16 / 89 34 / 116
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Montana 2022-08-08 13% -> 24% (+11%) 9 / 71 6 / 25
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kansas 2022-09-19 10% -> 20% (+11%) 22 / 230 11 / 54
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Dakota 2022-08-08 23% -> 33% (+11%) 21 / 93 19 / 57
BA.5.2.3BA.5.2.3 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron North Dakota 2022-09-19 1% -> 12% (+11%) 2 / 160 10 / 84
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Wyoming 2022-08-22 9% -> 20% (+11%) 12 / 127 9 / 45
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Oregon 2022-09-05 28% -> 39% (+11%) 66 / 234 84 / 217
BA.5.5BA.5.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Rhode Island 2022-09-19 1% -> 11% (+10%) 4 / 338 6 / 55
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Arkansas 2022-09-19 18% -> 27% (+9%) 20 / 110 6 / 22
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Missouri 2022-09-19 3% -> 12% (+9%) 12 / 352 7 / 58
BF.10BF.10 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Louisiana 2022-09-19 5% -> 13% (+8%) 12 / 260 9 / 69
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Wisconsin 2022-08-22 12% -> 20% (+8%) 84 / 701 93 / 458
BE.1BE.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mississippi 2022-08-22 1% -> 9% (+8%) 3 / 285 18 / 192
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Oklahoma 2022-08-22 2% -> 10% (+8%) 1 / 47 5 / 48
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron West Virginia 2022-08-08 6% -> 14% (+8%) 16 / 285 38 / 279
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indiana 2022-09-19 21% -> 29% (+8%) 84 / 406 12 / 42
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nebraska 2022-08-22 11% -> 18% (+8%) 44 / 416 76 / 412
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Carolina 2022-08-22 7% -> 13% (+7%) 21 / 320 68 / 510
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Tennessee 2022-09-05 11% -> 18% (+7%) 22 / 202 23 / 131
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Virginia 2022-09-19 16% -> 22% (+6%) 159 / 1,006 17 / 77
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron District of Columbia 2022-09-05 25% -> 32% (+6%) 78 / 306 46 / 145
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Connecticut 2022-09-05 9% -> 15% (+6%) 77 / 861 126 / 833
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Florida 2022-09-19 19% -> 25% (+6%) 291 / 1,523 30 / 119
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Delaware 2022-08-22 6% -> 12% (+6%) 21 / 326 30 / 242
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Minnesota 2022-08-08 10% -> 16% (+6%) 83 / 806 162 / 998
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pennsylvania 2022-09-19 20% -> 26% (+6%) 289 / 1,429 38 / 146
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Alaska 2022-09-05 27% -> 32% (+6%) 20 / 75 10 / 31
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Mexico 2022-09-05 2% -> 8% (+6%) 3 / 136 7 / 90
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Alabama 2022-09-05 9% -> 14% (+6%) 24 / 278 16 / 113
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Texas 2022-09-19 18% -> 24% (+6%) 594 / 3,282 38 / 161
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Utah 2022-09-05 28% -> 34% (+5%) 274 / 964 151 / 447
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colorado 2022-08-08 12% -> 17% (+5%) 303 / 2,553 278 / 1,622
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Arizona 2022-08-08 11% -> 16% (+5%) 159 / 1,470 174 / 1,086
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ohio 2022-09-19 18% -> 23% (+5%) 139 / 770 16 / 69
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hawaii 2022-09-05 3% -> 6% (+4%) 13 / 447 10 / 155
BA.2BA.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron North Carolina 2022-09-05 0% -> 4% (+3%) 1 / 2,267 76 / 2,163
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New York 2022-09-19 2% -> 5% (+3%) 79 / 3,841 30 / 546
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Illinois 2022-09-19 1% -> 4% (+3%) 23 / 1,650 8 / 193
BF.4BF.4 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, T259A, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Jersey 2022-09-19 0% -> 2% (+2%) 4 / 2,102 8 / 320
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Michigan 2022-08-22 2% -> 4% (+2%) 24 / 1,497 60 / 1,668
BA.5.2.6BA.5.2.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Massachusetts 2022-09-05 0% -> 2% (+2%) 3 / 1,173 19 / 921
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Maryland 2022-09-05 2% -> 3% (+2%) 17 / 1,020 28 / 813
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nevada 2022-08-22 1% -> 3% (+2%) 7 / 468 12 / 387
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron California 2022-09-19 1% -> 2% (+2%) 42 / 5,085 16 / 659
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 2022-08-08 1% -> 2% (+1%) 11 / 1,105 28 / 1,261
*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

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Dashboard Timeline

August 02, 2022
07:00PM

Cache loading updated

Modified cache loading logic to avoid incomplete loading of cache
July 26, 2022
08:00PM

QC pipeline updated

Began filtering out genomes <= 25kb in length and >30% undetermined bases, and began re-calling undetermined lineages
January 07, 2022
04:30PM

Top/emerging variant graphs updated

Added overlays and country-specific information to variant graphs
November 27, 2021
01:30PM

WHO Labels Updated

Added Omicron WHO variant
November 18, 2021
04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages
April 16, 2021
08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page
April 16, 2021
08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily
April 05, 2021
03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page
March 23, 2021
06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release
November 13, 2020
04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!
June 15, 2020
12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts
June 04, 2020
08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time
June 02, 2020
12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash
May 26, 2020
12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b
May 11, 2020
12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10
April 27, 2020
12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships
April 03, 2020
12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc
April 02, 2020
10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files
March 31, 2020
12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes
January 10, 2020
12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling
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