Regeneron COVID-19 Dashboard

Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

11,401,089

SARS-CoV-2 (hCoV-19) genomes

June 24, 2022
06:34 PM ET

Last data update

Top Lineages Per Country (Past 12 Weeks)

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

88%

2,191

2,503

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Russia

87%

312

358

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Republic of Serbia

86%

315

368

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Liechtenstein

79%

124

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

77%

1,540

2,009

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

76%

2,112

2,791

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Austria

75%

18,992

25,285

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

75%

370

493

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

74%

25,564

34,373

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

74%

4,079

5,499

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

73%

4,176

5,723

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

72%

2,958

4,086

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

72%

2,738

3,814

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

70%

68,943

98,735

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

70%

8,904

12,762

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

68%

1,045

1,527

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

68%

306

449

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

68%

68,330

100,501

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

68%

2,899

4,289

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

67%

6,929

10,294

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

66%

4,153

6,287

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

64%

1,045

1,634

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

63%

35,110

55,487

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

61%

8,444

13,762

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

58%

5,744

9,877

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Lithuania

52%

1,086

2,076

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

51%

589

1,146

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

45%

2,291

5,037

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

45%

2,188

4,828

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

44%

2,140

4,828

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

41%

471

1,146

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

36%

1,819

5,037

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Lithuania

36%

749

2,076

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

21%

348

1,634

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

20%

313

1,527

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

20%

778

3,814

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

20%

10,862

55,487

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

18%

770

4,289

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

18%

493

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

16%

2,139

13,762

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

15%

14,881

98,735

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

14%

3,629

25,285

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

14%

287

2,009

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

13%

731

5,499

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

13%

1,288

9,877

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

11%

449

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

10%

1,057

10,294

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

10%

281

2,791

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Cuba

100%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

58%

118

205

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

55%

148

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

53%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

52%

428

826

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guadeloupe

51%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guadeloupe

44%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

44%

16,223

37,009

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Panama

41%

140

341

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

United States

39%

113,024

293,342

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United States

35%

102,577

293,342

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Panama

34%

116

341

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (69%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Guatemala

34%

162

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

32%

315

977

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

32%

310

977

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

31%

922

2,998

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

28%

228

826

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

27%

162

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

27%

205

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

23%

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Mexico

21%

630

2,998

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

20%

612

2,998

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

20%

148

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Canada

19%

6,986

37,009

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

19%

6,902

37,009

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

18%

173

977

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

16%

148

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

15%

162

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

13%

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

10%

205

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kazakhstan

93%

BA.2.2BA.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, I1221T

Omicron

China

92%

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brunei

87%

106

122

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

86%

100

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

78%

4,447

5,682

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

66%

1,385

2,087

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

65%

106

164

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Iran

63%

210

334

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

53%

13,275

25,048

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

50%

1,351

2,710

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

49%

1,581

3,254

BA.2.2BA.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, I1221T

Omicron

Hong Kong

46%

576

1,247

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

45%

119

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

South Korea

42%

5,381

12,806

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Laos

39%

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Laos

37%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

37%

311

839

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

35%

106

303

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

35%

106

303

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

33%

4,219

12,806

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

33%

119

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iran

32%

108

334

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

31%

177

562

BA.2.3.2BA.2.3.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (82%), S477N (88%), T478K (88%), E484A (88%), Q493R (88%), Q498R (88%), N501Y (88%), Y505H (88%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

31%

173

562

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

29%

241

839

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

28%

159

562

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

26%

324

1,247

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

25%

665

2,710

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

22%

7,033

31,737

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

21%

2,700

12,806

BA.2.3.2BA.2.3.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (82%), S477N (88%), T478K (88%), E484A (88%), Q493R (88%), Q498R (88%), N501Y (88%), Y505H (88%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Laos

19%

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

19%

397

2,087

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

18%

5,698

31,737

BA.2.3.1BA.2.3.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, Q677E, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

16%

4,940

31,737

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

15%

164

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

14%

120

839

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

14%

3,434

25,048

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

13%

427

3,254

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Philippines

13%

303

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (81%), S477N, T478K, E484A, Q493R (85%), Q498R (87%), N501Y (88%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (87%), P25- (87%), P26- (87%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

12%

119

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

12%

382

3,254

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

11%

140

1,247

BA.2.29BA.2.29 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

11%

3,518

31,737

BA.2.24BA.2.24 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339N, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

10%

3,271

31,737

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

67%

15,566

23,121

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

60%

1,417

2,370

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Solomon Islands

51%

130

BA.2.3.3BA.2.3.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Solomon Islands

43%

130

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (81%), S477N, T478K, E484A, Q493R (85%), Q498R (87%), N501Y (88%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (87%), P25- (87%), P26- (87%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

28%

673

2,370

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

66%

4,131

6,219

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

55%

454

830

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Paraguay

49%

139

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

46%

833

1,828

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

45%

136

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

44%

110

251

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

42%

105

251

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

41%

215

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

41%

1,116

2,731

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

40%

106

266

BA.2.30BA.2.30 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

37%

257

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

34%

257

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Aruba

27%

115

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Peru

24%

430

1,828

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

22%

266

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (69%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Paraguay

21%

139

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

20%

215

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

19%

115

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (69%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Chile

18%

500

2,731

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (69%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Argentina

17%

266

BA.2.30BA.2.30 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

17%

115

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (69%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Ecuador

15%

215

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Colombia

12%

101

830

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

12%

266

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

11%

115

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

11%

305

2,731

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

92%

526

573

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Morocco

67%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

64%

259

404

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (55%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

56%

2,417

4,326

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Eswatini

55%

112

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ghana

52%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

41%

155

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kenya

33%

125

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Eswatini

26%

112

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (55%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ghana

25%

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (55%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

25%

155

BA.2.23BA.2.23 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

24%

155

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Ghana

22%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

21%

918

4,326

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Kenya

20%

125

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

19%

814

4,326

BA.2.31BA.2.31 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (70%), K417N (71%), N440K (56%), S477N (87%), T478K (87%), E484A (88%), Q493R (87%), Q498R (88%), N501Y (89%), Y505H (88%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kenya

18%

125

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (55%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Eswatini

15%

112

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kenya

13%

125

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Mauritius

12%

404

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (81%), S477N, T478K, E484A, Q493R (85%), Q498R (87%), N501Y (88%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (87%), P25- (87%), P26- (87%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

11%

404

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

State

Percent

Lineage Count

Total Count

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New York

54%

22,991

42,389

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

South Carolina

52%

760

1,468

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Pennsylvania

51%

4,463

8,830

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Dakota

50%

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Alabama

49%

270

547

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

North Carolina

48%

6,630

13,718

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Iowa

48%

597

1,241

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Jersey

46%

7,066

15,233

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Georgia

46%

1,725

3,768

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Connecticut

44%

3,041

6,854

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Florida

44%

7,597

17,238

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Washington

44%

6,021

13,680

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Michigan

44%

2,538

5,791

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Indiana

44%

965

2,203

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Virginia

44%

3,388

7,765

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maryland

44%

2,848

6,529

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Rhode Island

43%

930

2,138

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Kansas

43%

414

965

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Ohio

42%

1,438

3,424

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Idaho

42%

205

489

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Wyoming

42%

168

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wisconsin

42%

1,843

4,425

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Massachusetts

41%

5,702

13,860

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Missouri

40%

633

1,579

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colorado

40%

4,497

11,218

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Tennessee

40%

416

1,042

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Delaware

40%

437

1,105

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

District of Columbia

40%

1,780

4,501

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Montana

39%

137

348

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Arizona

39%

2,107

5,379

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

West Virginia

39%

242

619

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Louisiana

39%

737

1,891

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oregon

39%

1,275

3,295

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Minnesota

39%

1,668

4,319

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nevada

38%

1,024

2,670

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oklahoma

38%

128

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Illinois

38%

3,230

8,486

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

California

38%

15,331

40,325

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Utah

38%

2,653

6,994

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Texas

38%

4,862

12,916

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Hampshire

38%

280

744

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Mississippi

37%

234

626

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Maine

37%

395

1,062

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hawaii

37%

1,221

3,311

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

37%

312

853

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

37%

312

853

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Mexico

35%

276

779

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alaska

35%

175

497

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Arkansas

35%

103

296

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nebraska

34%

727

2,118

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

North Dakota

34%

499

1,458

BA.2.12BA.2.12 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (79%), K417N (77%), S477N (63%), T478K (64%), E484A (64%), Q493R (64%), Q498R (63%), N501Y (64%), Y505H (64%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Vermont

34%

673

1,983

*Criteria: Minimum of 20 samples per state.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Sweden

2022-06-13

8% -> 68% (+60%)

27 / 343

15 / 22

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

2022-05-30

12% -> 39% (+28%)

181 / 1,568

550 / 1,398

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

2022-05-16

37% -> 64% (+27%)

432 / 1,164

709 / 1,101

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

2022-06-13

38% -> 64% (+25%)

546 / 1,419

14 / 22

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

2022-05-30

6% -> 31% (+24%)

325 / 5,113

1,758 / 5,716

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

2022-05-30

8% -> 32% (+24%)

1,107 / 14,593

3,546 / 11,182

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

2022-05-30

8% -> 32% (+24%)

49 / 597

64 / 199

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

2022-05-16

67% -> 90% (+24%)

20 / 30

19 / 21

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

2022-05-30

14% -> 38% (+24%)

112 / 804

213 / 566

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

2022-05-30

11% -> 34% (+23%)

182 / 1,672

667 / 1,946

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

2022-05-30

10% -> 33% (+23%)

396 / 3,935

853 / 2,550

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

2022-05-30

7% -> 30% (+22%)

19 / 269

47 / 159

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

2022-05-30

18% -> 40% (+22%)

228 / 1,262

228 / 573

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

2022-05-30

7% -> 25% (+18%)

531 / 7,442

2,025 / 8,085

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

2022-05-30

6% -> 21% (+15%)

66 / 1,123

286 / 1,358

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

2022-05-16

3% -> 15% (+12%)

29 / 933

136 / 919

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

2022-04-18

62% -> 73% (+11%)

119 / 193

187 / 256

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

2022-05-16

1% -> 11% (+10%)

3 / 378

38 / 338

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

2022-05-30

2% -> 12% (+10%)

8 / 454

29 / 240

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

2022-04-18

38% -> 47% (+10%)

204 / 542

94 / 199

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Austria

2022-04-18

70% -> 78% (+8%)

3,891 / 5,566

4,259 / 5,489

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Russia

2022-05-16

84% -> 91% (+6%)

102 / 121

108 / 119

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

2022-05-02

84% -> 90% (+6%)

649 / 769

236 / 262

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

2022-05-16

1% -> 5% (+4%)

3 / 417

11 / 227

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

2022-05-16

0% -> 4% (+4%)

1 / 677

6 / 147

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Republic of Serbia

2022-05-02

1% -> 4% (+2%)

1 / 79

6 / 162

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

2022-05-30

9% -> 71% (+61%)

6 / 64

17 / 24

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

2022-05-30

36% -> 65% (+29%)

19 / 53

24 / 37

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

2022-05-16

18% -> 47% (+29%)

8 / 44

15 / 32

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

2022-05-02

16% -> 41% (+25%)

28 / 172

76 / 186

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

United States

2022-05-02

27% -> 43% (+16%)

16,820 / 61,255

31,539 / 73,031

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

2022-04-18

12% -> 24% (+12%)

35 / 300

99 / 414

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

2022-06-13

29% -> 38% (+10%)

677 / 2,373

21 / 55

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Panama

2022-04-18

1% -> 11% (+10%)

1 / 80

9 / 83

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

2022-04-18

30% -> 39% (+9%)

48 / 161

84 / 218

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

2022-05-30

8% -> 34% (+26%)

51 / 678

235 / 693

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Laos

2022-04-18

30% -> 55% (+25%)

12 / 40

18 / 33

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

2022-05-30

15% -> 39% (+24%)

24 / 161

89 / 227

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

2022-05-30

7% -> 31% (+24%)

254 / 3,417

1,998 / 6,355

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

South Korea

2022-05-30

29% -> 53% (+24%)

789 / 2,707

180 / 341

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

2022-05-30

78% -> 100% (+22%)

25 / 32

24 / 24

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iran

2022-04-18

20% -> 41% (+21%)

22 / 111

46 / 112

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Philippines

2022-04-18

2% -> 23% (+21%)

1 / 44

15 / 65

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

2022-05-30

1% -> 19% (+18%)

52 / 4,085

22 / 117

BA.2.14BA.2.14 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24- (85%), P25- (85%), P26- (85%), A27S (86%), W64L, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

2022-06-13

6% -> 22% (+16%)

3 / 50

5 / 23

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

2022-04-18

21% -> 35% (+14%)

12 / 57

11 / 31

BA.2.2BA.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, I1221T

Omicron

Hong Kong

2022-05-30

21% -> 34% (+14%)

39 / 190

70 / 204

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

2022-05-16

29% -> 42% (+13%)

18 / 63

21 / 50

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

2022-06-13

78% -> 88% (+10%)

967 / 1,233

30 / 34

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

2022-04-18

49% -> 56% (+7%)

182 / 375

450 / 809

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Solomon Islands

2022-04-18

25% -> 55% (+30%)

5 / 20

55 / 100

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

2022-06-13

10% -> 22% (+12%)

215 / 2,164

37 / 172

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

2022-04-18

55% -> 61% (+6%)

404 / 731

493 / 802

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

2022-04-18

4% -> 36% (+32%)

1 / 25

8 / 22

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Paraguay

2022-05-02

19% -> 50% (+31%)

4 / 21

42 / 84

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

2022-05-30

5% -> 34% (+29%)

3 / 57

10 / 29

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

2022-04-18

9% -> 33% (+24%)

4 / 47

16 / 49

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

2022-04-18

31% -> 52% (+21%)

45 / 143

90 / 172

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Colombia

2022-05-16

6% -> 24% (+18%)

17 / 277

44 / 180

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Chile

2022-05-30

15% -> 32% (+18%)

111 / 760

26 / 80

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

2022-05-30

6% -> 21% (+15%)

90 / 1,453

178 / 830

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

2022-04-18

28% -> 38% (+10%)

8 / 29

20 / 53

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Curacao

2022-05-30

5% -> 14% (+9%)

3 / 57

8 / 56

BA.2.7BA.2.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (67%), S477N (72%), T478K (72%), E484A (72%), Q493R (72%), Q498R (72%), N501Y (72%), Y505H (72%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

2022-05-02

9% -> 17% (+9%)

3 / 35

5 / 29

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (55%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ghana

2022-05-30

10% -> 44% (+34%)

4 / 40

14 / 32

BA.2.23BA.2.23 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

2022-04-18

8% -> 38% (+30%)

2 / 26

8 / 21

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (62%)
Spike (non-RBD)	D614G (89%), P681H (63%)

Mauritius

2022-05-16

10% -> 33% (+23%)

21 / 200

19 / 57

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (55%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

2022-04-18

38% -> 59% (+21%)

325 / 861

897 / 1,532

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Eswatini

2022-04-18

19% -> 31% (+13%)

5 / 27

23 / 74

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kenya

2022-05-16

15% -> 26% (+11%)

3 / 20

22 / 85

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

State

2-Week Period

Change

Previous Support

Current Support

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arkansas

2022-05-30

1% -> 49% (+48%)

1 / 75

46 / 93

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Vermont

2022-05-16

18% -> 55% (+37%)

93 / 506

118 / 215

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Idaho

2022-05-02

12% -> 46% (+34%)

12 / 101

28 / 61

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Massachusetts

2022-05-16

33% -> 63% (+30%)

1,095 / 3,338

634 / 1,014

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Mississippi

2022-05-02

15% -> 44% (+29%)

14 / 92

74 / 168

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

South Carolina

2022-04-18

17% -> 45% (+28%)

33 / 196

120 / 265

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Rhode Island

2022-05-02

22% -> 49% (+27%)

121 / 555

228 / 467

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

West Virginia

2022-05-02

17% -> 41% (+24%)

20 / 120

110 / 268

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Delaware

2022-05-02

31% -> 55% (+24%)

112 / 364

145 / 264

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Nebraska

2022-05-16

23% -> 47% (+24%)

121 / 526

225 / 479

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Wyoming

2022-05-16

37% -> 61% (+24%)

13 / 35

42 / 69

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Arizona

2022-05-02

15% -> 39% (+24%)

139 / 907

499 / 1,280

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Montana

2022-05-16

27% -> 49% (+23%)

22 / 82

47 / 95

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Missouri

2022-05-16

33% -> 56% (+23%)

147 / 442

169 / 303

BA.2.12BA.2.12 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (79%), K417N (77%), S477N (63%), T478K (64%), E484A (64%), Q493R (64%), Q498R (63%), N501Y (64%), Y505H (64%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maine

2022-04-18

0% -> 23% (+22%)

1 / 254

76 / 333

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Tennessee

2022-05-30

14% -> 36% (+22%)

19 / 135

20 / 55

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Alabama

2022-05-02

24% -> 46% (+22%)

5 / 21

47 / 102

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Kansas

2022-04-18

21% -> 43% (+22%)

22 / 103

91 / 212

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Oklahoma

2022-05-02

29% -> 50% (+21%)

8 / 28

16 / 32

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Hampshire

2022-05-16

41% -> 62% (+21%)

46 / 112

59 / 95

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oregon

2022-06-13

8% -> 29% (+21%)

17 / 223

6 / 21

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Jersey

2022-05-02

33% -> 54% (+21%)

993 / 2,980

2,283 / 4,210

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Louisiana

2022-04-18

8% -> 28% (+20%)

14 / 180

77 / 276

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

North Dakota

2022-05-16

23% -> 43% (+20%)

76 / 328

156 / 361

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Mexico

2022-04-18

6% -> 25% (+20%)

15 / 266

72 / 285

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

2022-05-16

42% -> 61% (+19%)

144 / 341

81 / 133

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

District of Columbia

2022-05-02

30% -> 49% (+19%)

256 / 851

584 / 1,199

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Indiana

2022-05-16

44% -> 63% (+18%)

316 / 715

314 / 502

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Wisconsin

2022-05-02

19% -> 36% (+18%)

218 / 1,178

447 / 1,231

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Virginia

2022-04-18

17% -> 34% (+18%)

179 / 1,080

678 / 1,974

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Pennsylvania

2022-05-02

37% -> 55% (+18%)

649 / 1,746

1,198 / 2,181

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Georgia

2022-05-02

30% -> 48% (+18%)

226 / 742

361 / 750

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Ohio

2022-04-18

17% -> 34% (+18%)

108 / 639

339 / 983

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Texas

2022-04-18

5% -> 23% (+18%)

97 / 1,790

482 / 2,102

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Connecticut

2022-05-02

34% -> 51% (+17%)

529 / 1,568

993 / 1,958

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Hawaii

2022-05-16

36% -> 53% (+16%)

319 / 877

304 / 575

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

California

2022-05-02

19% -> 35% (+16%)

1,556 / 8,196

3,534 / 9,976

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Florida

2022-05-02

28% -> 44% (+16%)

849 / 3,035

1,477 / 3,334

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Illinois

2022-05-02

26% -> 42% (+16%)

470 / 1,813

993 / 2,353

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Michigan

2022-04-18

16% -> 32% (+16%)

151 / 959

328 / 1,034

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maryland

2022-05-16

46% -> 62% (+16%)

831 / 1,794

1,010 / 1,631

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Minnesota

2022-05-02

15% -> 31% (+15%)

143 / 940

332 / 1,082

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Washington

2022-05-16

23% -> 38% (+15%)

705 / 3,051

1,181 / 3,092

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (55%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Carolina

2022-06-13

5% -> 20% (+15%)

75 / 1,595

18 / 91

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Iowa

2022-04-18

30% -> 43% (+14%)

51 / 171

159 / 366

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New York

2022-04-18

34% -> 48% (+14%)

2,959 / 8,616

4,004 / 8,355

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nevada

2022-05-30

6% -> 19% (+13%)

36 / 646

82 / 432

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Colorado

2022-05-16

29% -> 42% (+13%)

719 / 2,519

1,333 / 3,188

BA.2.12BA.2.12 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (79%), K417N (77%), S477N (63%), T478K (64%), E484A (64%), Q493R (64%), Q498R (63%), N501Y (64%), Y505H (64%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Alaska

2022-05-02

3% -> 14% (+11%)

2 / 69

16 / 112

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Utah

2022-05-02

18% -> 28% (+10%)

144 / 818

475 / 1,722

*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

Dashboard Timeline

January 07, 2022

04:30PM

Top/emerging variant graphs updated

Added overlays and country-specific information to variant graphs

November 27, 2021

01:30PM

WHO Labels Updated

Added Omicron WHO variant

November 18, 2021

04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages

April 16, 2021

08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page

April 16, 2021

08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily

April 05, 2021

03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page

March 23, 2021

06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release

November 13, 2020

04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!

June 15, 2020

12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts

June 04, 2020

08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time

June 02, 2020

12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash

May 26, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b

May 11, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10

April 27, 2020

12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships

April 03, 2020

12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc

April 02, 2020

10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files

March 31, 2020

12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes

January 10, 2020

12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling

Welcome to the Regeneron COVID-19 Dashboard

11,401,089

June 24, 2022
06:34 PM ET

06:34 PM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

Welcome to the Regeneron COVID-19 Dashboard

11,401,089

June 24, 202206:34 PM ET

06:34 PM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

June 24, 2022
06:34 PM ET