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Welcome to the Regeneron COVID-19 Dashboard
This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.
The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.
In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.
12,059,728
SARS-CoV-2 (hCoV-19) genomes
August 11, 202212:29 AM ET
Last data update
Top Lineages Per Country (Past 12 Weeks)
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Lineage | WHO Label | Country | Percent | Lineage Count | Total Count | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Portugal | 77% | 2,691 | 3,482 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Russia | 51% | 170 | 332 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Latvia | 44% | 97 | 222 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Republic of Serbia | 43% | 92 | 216 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Luxembourg | 42% | 2,201 | 5,198 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Spain | 41% | 4,109 | 10,121 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | France | 37% | 14,509 | 39,569 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Switzerland | 35% | 1,276 | 3,684 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Netherlands | 34% | 2,903 | 8,562 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Sweden | 33% | 2,839 | 8,576 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Turkey | 31% | 481 | 1,559 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Slovenia | 30% | 586 | 1,938 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Belgium | 30% | 3,430 | 11,525 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Denmark | 30% | 10,174 | 34,287 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Romania | 29% | 59 | 203 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Estonia | 28% | 155 | 562 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Italy | 27% | 2,565 | 9,404 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Poland | 27% | 283 | 1,052 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Iceland | 26% | 229 | 873 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Finland | 26% | 517 | 1,972 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Slovakia | 26% | 531 | 2,032 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Ireland | 26% | 1,941 | 7,609 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Greece | 25% | 359 | 1,436 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | United Kingdom | 24% | 19,702 | 83,027 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Iceland | 23% | 201 | 873 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Estonia | 23% | 127 | 562 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Austria | 22% | 1,116 | 4,962 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Croatia | 22% | 373 | 1,672 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Czechia | 22% | 634 | 2,912 | ||||||
BA.5BA.5 (Omicron) Mutations
|
Omicron | Norway | 21% | 558 | 2,597 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Belgium | 20% | 2,277 | 11,525 | ||||||
BE.1.1BE.1.1 (Omicron) Mutations
|
Omicron | Germany | 20% | 9,091 | 46,264 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Poland | 19% | 195 | 1,052 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Germany | 19% | 8,561 | 46,264 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Germany | 17% | 8,064 | 46,264 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Greece | 16% | 233 | 1,436 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Norway | 16% | 418 | 2,597 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Finland | 16% | 314 | 1,972 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Austria | 16% | 786 | 4,962 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Italy | 16% | 1,483 | 9,404 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Turkey | 15% | 241 | 1,559 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Turkey | 15% | 237 | 1,559 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Russia | 15% | 50 | 332 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Latvia | 15% | 33 | 222 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Romania | 14% | 28 | 203 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Norway | 13% | 343 | 2,597 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Denmark | 13% | 4,437 | 34,287 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Sweden | 13% | 1,078 | 8,576 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Switzerland | 12% | 451 | 3,684 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | United Kingdom | 12% | 10,060 | 83,027 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Norway | 12% | 310 | 2,597 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Romania | 12% | 24 | 203 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Slovenia | 12% | 228 | 1,938 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Czechia | 11% | 332 | 2,912 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Spain | 11% | 1,153 | 10,121 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Croatia | 11% | 190 | 1,672 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Poland | 11% | 116 | 1,052 | ||||||
BA.4BA.4 (Omicron) Mutations
|
Omicron | Ireland | 11% | 838 | 7,609 | ||||||
BF.5BF.5 (Omicron) Mutations
|
Omicron | Slovakia | 11% | 223 | 2,032 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Netherlands | 11% | 939 | 8,562 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | France | 11% | 4,335 | 39,569 | ||||||
BA.5BA.5 (Omicron) Mutations
|
Omicron | Austria | 11% | 540 | 4,962 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Romania | 11% | 22 | 203 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Ireland | 11% | 818 | 7,609 | ||||||
BA.2.9BA.2.9 (Omicron) Mutations
|
Omicron | Estonia | 11% | 60 | 562 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Slovenia | 10% | 202 | 1,938 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Czechia | 10% | 298 | 2,912 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Slovenia | 10% | 196 | 1,938 | ||||||
BE.1.1BE.1.1 (Omicron) Mutations
|
Omicron | Luxembourg | 10% | 523 | 5,198 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Sweden | 10% | 860 | 8,576 |
Lineage | WHO Label | Country | Percent | Lineage Count | Total Count | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.2.2BA.5.2.2 (Omicron) Mutations
|
Omicron | Martinique | 73% | 156 | 213 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | U.S. Virgin Islands | 57% | 52 | 92 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Panama | 56% | 90 | 162 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Jamaica | 53% | 40 | 76 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Puerto Rico | 47% | 483 | 1,026 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Sint Maarten | 45% | 49 | 109 | ||||||
BA.4.6BA.4.6 (Omicron) Mutations
|
Omicron | Dominican Republic | 32% | 77 | 238 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | United States | 32% | 87,923 | 271,892 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Guatemala | 28% | 37 | 134 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Mexico | 27% | 2,326 | 8,766 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Jamaica | 26% | 20 | 76 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Canada | 25% | 6,534 | 25,879 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Dominican Republic | 24% | 57 | 238 | ||||||
BA.4BA.4 (Omicron) Mutations
|
Omicron | Costa Rica | 23% | 264 | 1,158 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Mexico | 23% | 1,992 | 8,766 | ||||||
BA.5.5BA.5.5 (Omicron) Mutations
|
Omicron | Guatemala | 18% | 24 | 134 | ||||||
BE.1BE.1 (Omicron) Mutations
|
Omicron | Costa Rica | 17% | 192 | 1,158 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Sint Maarten | 16% | 17 | 109 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | United States | 14% | 39,408 | 271,892 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Canada | 14% | 3,718 | 25,879 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Sint Maarten | 14% | 15 | 109 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Dominican Republic | 13% | 32 | 238 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Guatemala | 13% | 18 | 134 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Costa Rica | 13% | 155 | 1,158 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Canada | 12% | 3,173 | 25,879 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Martinique | 11% | 24 | 213 | ||||||
XAFXAF Mutations
|
NA | Panama | 11% | 18 | 162 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Puerto Rico | 11% | 114 | 1,026 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Costa Rica | 11% | 125 | 1,158 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Panama | 10% | 17 | 162 |
Lineage | WHO Label | Country | Percent | Lineage Count | Total Count | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
BA.2.3.7BA.2.3.7 (Omicron) Mutations
|
Omicron | Taiwan | 89% | 253 | 284 | ||||||
BA.5.3.1BA.5.3.1 (Omicron) Mutations
|
Omicron | Bangladesh | 68% | 184 | 271 | ||||||
BA.2.2BA.2.2 (Omicron) Mutations
|
Omicron | Hong Kong | 65% | 914 | 1,407 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Indonesia | 63% | 3,556 | 5,641 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Pakistan | 56% | 340 | 603 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Philippines | 54% | 392 | 721 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Kazakhstan | 50% | 39 | 78 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Kuwait | 40% | 66 | 164 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Brunei | 38% | 167 | 442 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Cambodia | 37% | 61 | 163 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Iran | 36% | 32 | 88 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Vietnam | 35% | 85 | 243 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Kazakhstan | 32% | 25 | 78 | ||||||
BA.2.38BA.2.38 (Omicron) Mutations
|
Omicron | Nepal | 31% | 43 | 137 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Thailand | 31% | 579 | 1,866 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Iran | 31% | 27 | 88 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Malaysia | 31% | 401 | 1,311 | ||||||
BA.2.79BA.2.79 (Omicron) Mutations
|
Omicron | Kuwait | 29% | 48 | 164 | ||||||
BA.2.3.2BA.2.3.2 (Omicron) Mutations
|
Omicron | Vietnam | 27% | 66 | 243 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Malaysia | 27% | 350 | 1,311 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Singapore | 26% | 877 | 3,361 | ||||||
BA.2.3BA.2.3 (Omicron) Mutations
|
Omicron | Brunei | 23% | 102 | 442 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Pakistan | 23% | 137 | 603 | ||||||
BF.5BF.5 (Omicron) Mutations
|
Omicron | Israel | 22% | 7,933 | 35,420 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Georgia | 22% | 23 | 103 | ||||||
BA.2.38BA.2.38 (Omicron) Mutations
|
Omicron | India | 22% | 3,416 | 15,720 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Thailand | 22% | 403 | 1,866 | ||||||
BA.2.3BA.2.3 (Omicron) Mutations
|
Omicron | South Korea | 20% | 1,200 | 5,875 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Nepal | 20% | 27 | 137 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Japan | 18% | 4,867 | 26,366 | ||||||
BA.2.76BA.2.76 (Omicron) Mutations
|
Omicron | India | 18% | 2,772 | 15,720 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Bangladesh | 16% | 43 | 271 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | India | 16% | 2,448 | 15,720 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Georgia | 16% | 16 | 103 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Georgia | 16% | 16 | 103 | ||||||
BA.2.76BA.2.76 (Omicron) Mutations
|
Omicron | Nepal | 15% | 21 | 137 | ||||||
BA.2.3BA.2.3 (Omicron) Mutations
|
Omicron | Vietnam | 15% | 37 | 243 | ||||||
BF.5BF.5 (Omicron) Mutations
|
Omicron | Brunei | 15% | 67 | 442 | ||||||
BA.2.9.5BA.2.9.5 (Omicron) Mutations
|
Omicron | Thailand | 15% | 276 | 1,866 | ||||||
BA.2.40.1BA.2.40.1 (Omicron) Mutations
|
Omicron | Malaysia | 14% | 190 | 1,311 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | South Korea | 14% | 810 | 5,875 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Israel | 14% | 4,826 | 35,420 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Singapore | 13% | 453 | 3,361 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | South Korea | 13% | 788 | 5,875 | ||||||
BA.2.75BA.2.75 (Omicron) Mutations
|
Omicron | Nepal | 12% | 17 | 137 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Israel | 12% | 4,295 | 35,420 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Israel | 12% | 4,157 | 35,420 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Singapore | 11% | 361 | 3,361 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Japan | 10% | 2,647 | 26,366 |
Lineage | WHO Label | Country | Percent | Lineage Count | Total Count | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Northern Mariana Islands | 65% | 60 | 93 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | New Zealand | 40% | 1,200 | 2,988 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Australia | 22% | 4,321 | 19,209 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Australia | 17% | 3,295 | 19,209 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Australia | 13% | 2,487 | 19,209 | ||||||
BA.2.10BA.2.10 (Omicron) Mutations
|
Omicron | New Zealand | 12% | 347 | 2,988 |
Lineage | WHO Label | Country | Percent | Lineage Count | Total Count | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.2.2BA.5.2.2 (Omicron) Mutations
|
Omicron | French Guiana | 45% | 225 | 496 | ||||||
BA.5.6BA.5.6 (Omicron) Mutations
|
Omicron | Aruba | 42% | 72 | 173 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Chile | 37% | 1,714 | 4,608 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Ecuador | 30% | 259 | 865 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Curacao | 28% | 48 | 169 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Colombia | 27% | 439 | 1,605 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Paraguay | 27% | 53 | 199 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Colombia | 26% | 419 | 1,605 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Peru | 25% | 1,133 | 4,519 | ||||||
BA.2.40.1BA.2.40.1 (Omicron) Mutations
|
Omicron | French Guiana | 24% | 120 | 496 | ||||||
BA.5.6BA.5.6 (Omicron) Mutations
|
Omicron | Bonaire | 23% | 36 | 157 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Argentina | 22% | 77 | 350 | ||||||
BE.1BE.1 (Omicron) Mutations
|
Omicron | Paraguay | 22% | 43 | 199 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Brazil | 21% | 2,352 | 10,998 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Brazil | 21% | 2,301 | 10,998 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Trinidad And Tobago | 20% | 75 | 376 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Colombia | 20% | 313 | 1,605 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Brazil | 19% | 2,104 | 10,998 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Trinidad And Tobago | 18% | 69 | 376 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Peru | 17% | 747 | 4,519 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Curacao | 16% | 27 | 169 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Bonaire | 14% | 22 | 157 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Bonaire | 12% | 19 | 157 | ||||||
BA.4BA.4 (Omicron) Mutations
|
Omicron | Argentina | 12% | 42 | 350 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Chile | 12% | 536 | 4,608 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Argentina | 11% | 39 | 350 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | French Guiana | 11% | 55 | 496 | ||||||
BA.4BA.4 (Omicron) Mutations
|
Omicron | Brazil | 11% | 1,217 | 10,998 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Aruba | 11% | 19 | 173 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Ecuador | 11% | 94 | 865 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Peru | 11% | 483 | 4,519 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Ecuador | 11% | 91 | 865 | ||||||
BA.2.9BA.2.9 (Omicron) Mutations
|
Omicron | Trinidad And Tobago | 10% | 39 | 376 | ||||||
BA.2.30BA.2.30 (Omicron) Mutations
|
Omicron | Curacao | 10% | 17 | 169 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Curacao | 10% | 17 | 169 | ||||||
BA.2.56BA.2.56 (Omicron) Mutations
|
Omicron | Paraguay | 10% | 20 | 199 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Peru | 10% | 453 | 4,519 |
Lineage | WHO Label | Country | Percent | Lineage Count | Total Count | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Ghana | 67% | 79 | 118 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Zambia | 64% | 41 | 64 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Kenya | 62% | 580 | 929 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Botswana | 61% | 409 | 674 | ||||||
BE.1.1BE.1.1 (Omicron) Mutations
|
Omicron | Nigeria | 60% | 51 | 85 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Morocco | 55% | 35 | 64 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Cabo Verde | 54% | 55 | 102 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Uganda | 50% | 57 | 113 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | France (Réunion Island) | 49% | 918 | 1,884 | ||||||
BA.4BA.4 (Omicron) Mutations
|
Omicron | South Africa | 24% | 310 | 1,308 | ||||||
BA.4BA.4 (Omicron) Mutations
|
Omicron | Zambia | 20% | 13 | 64 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | South Africa | 19% | 252 | 1,308 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Senegal | 19% | 14 | 73 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Uganda | 17% | 19 | 113 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Cabo Verde | 17% | 17 | 102 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Mauritius | 16% | 27 | 166 | ||||||
BA.4BA.4 (Omicron) Mutations
|
Omicron | Botswana | 16% | 108 | 674 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Morocco | 14% | 9 | 64 | ||||||
BA.5BA.5 (Omicron) Mutations
|
Omicron | Mauritius | 14% | 23 | 166 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | France (Réunion Island) | 14% | 258 | 1,884 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Cabo Verde | 13% | 13 | 102 | ||||||
BA.4BA.4 (Omicron) Mutations
|
Omicron | Ghana | 13% | 15 | 118 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Zambia | 12% | 8 | 64 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Kenya | 12% | 115 | 929 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Senegal | 12% | 9 | 73 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Mauritius | 12% | 20 | 166 | ||||||
BA.5BA.5 (Omicron) Mutations
|
Omicron | South Africa | 12% | 157 | 1,308 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Mauritius | 11% | 19 | 166 | ||||||
BE.1BE.1 (Omicron) Mutations
|
Omicron | Mauritius | 11% | 19 | 166 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Senegal | 11% | 8 | 73 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Morocco | 11% | 7 | 64 |
Lineage | WHO Label | State | Percent | Lineage Count | Total Count | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Wyoming | 46% | 193 | 421 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Hawaii | 43% | 968 | 2,260 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Colorado | 42% | 5,056 | 11,991 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Maine | 42% | 167 | 399 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | New Mexico | 41% | 469 | 1,135 | ||||||
BA.5.5BA.5.5 (Omicron) Mutations
|
Omicron | Arkansas | 41% | 420 | 1,025 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Florida | 40% | 5,502 | 13,778 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Vermont | 40% | 67 | 168 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Utah | 40% | 4,909 | 12,331 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Pennsylvania | 38% | 1,952 | 5,077 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Virginia | 38% | 2,731 | 7,122 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | New Hampshire | 38% | 186 | 488 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Delaware | 38% | 374 | 985 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Wisconsin | 37% | 1,480 | 3,970 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Montana | 37% | 184 | 498 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | North Carolina | 37% | 4,303 | 11,691 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Maryland | 36% | 1,476 | 4,095 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Connecticut | 35% | 1,363 | 3,864 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Alabama | 35% | 422 | 1,198 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Arizona | 35% | 2,087 | 5,970 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Michigan | 35% | 1,154 | 3,327 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | New Jersey | 34% | 3,510 | 10,245 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | West Virginia | 34% | 303 | 888 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Oklahoma | 34% | 35 | 104 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Washington | 33% | 3,563 | 10,665 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Rhode Island | 33% | 597 | 1,789 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | South Carolina | 33% | 629 | 1,904 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | District of Columbia | 33% | 1,044 | 3,165 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Oregon | 33% | 899 | 2,755 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Iowa | 31% | 461 | 1,484 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Georgia | 30% | 1,243 | 4,099 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | California | 30% | 15,174 | 50,242 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Nevada | 30% | 1,103 | 3,656 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Massachusetts | 30% | 928 | 3,132 | ||||||
BA.5.5BA.5.5 (Omicron) Mutations
|
Omicron | Tennessee | 29% | 252 | 868 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Idaho | 29% | 290 | 1,003 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | New York | 29% | 8,422 | 29,145 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Minnesota | 29% | 911 | 3,189 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | South Dakota | 28% | 72 | 258 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Indiana | 27% | 542 | 1,980 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Illinois | 27% | 2,517 | 9,204 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | North Dakota | 27% | 492 | 1,828 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Ohio | 26% | 876 | 3,325 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Texas | 26% | 5,958 | 23,240 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Nebraska | 25% | 706 | 2,783 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Missouri | 25% | 453 | 1,788 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Louisiana | 25% | 813 | 3,273 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Mississippi | 24% | 207 | 853 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Kentucky | 23% | 286 | 1,232 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Kansas | 23% | 320 | 1,394 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Alaska | 23% | 130 | 568 |
Lineage | WHO Label | Country | 2-Week Period | Change | Previous Support | Current Support | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
BA.2BA.2 (Omicron) Mutations
|
Omicron | Romania | 2022-05-30 | 9% -> 60% (+51%) | 5 / 53 | 15 / 25 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Turkey | 2022-05-30 | 31% -> 60% (+29%) | 199 / 634 | 191 / 316 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Italy | 2022-05-30 | 15% -> 40% (+25%) | 236 / 1,600 | 975 / 2,424 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Slovenia | 2022-05-30 | 14% -> 38% (+25%) | 57 / 417 | 98 / 256 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Norway | 2022-07-25 | 7% -> 29% (+22%) | 6 / 88 | 14 / 48 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Republic of Serbia | 2022-05-30 | 36% -> 57% (+21%) | 35 / 98 | 53 / 93 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Austria | 2022-05-30 | 23% -> 44% (+21%) | 301 / 1,298 | 562 / 1,266 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Germany | 2022-05-30 | 13% -> 33% (+20%) | 2,043 / 15,667 | 4,568 / 13,858 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Finland | 2022-05-30 | 16% -> 36% (+20%) | 124 / 764 | 148 / 414 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Spain | 2022-06-27 | 28% -> 47% (+19%) | 758 / 2,688 | 1,407 / 2,975 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Croatia | 2022-05-30 | 11% -> 29% (+19%) | 40 / 369 | 123 / 418 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Sweden | 2022-05-30 | 10% -> 29% (+19%) | 199 / 1,977 | 282 / 986 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Estonia | 2022-05-30 | 12% -> 30% (+18%) | 20 / 171 | 107 / 355 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Slovakia | 2022-06-27 | 11% -> 29% (+18%) | 29 / 276 | 197 / 681 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Russia | 2022-07-11 | 15% -> 33% (+18%) | 20 / 132 | 25 / 75 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Iceland | 2022-06-27 | 15% -> 32% (+18%) | 15 / 103 | 33 / 102 | ||||||
BA.2.9BA.2.9 (Omicron) Mutations
|
Omicron | Poland | 2022-05-30 | 24% -> 41% (+17%) | 29 / 121 | 53 / 128 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Denmark | 2022-05-30 | 8% -> 24% (+16%) | 836 / 10,177 | 1,434 / 5,899 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Belgium | 2022-06-27 | 19% -> 35% (+16%) | 467 / 2,416 | 897 / 2,554 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Czechia | 2022-06-27 | 10% -> 26% (+16%) | 59 / 564 | 206 / 793 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | France | 2022-05-30 | 11% -> 26% (+15%) | 1,047 / 9,446 | 2,416 / 9,163 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | United Kingdom | 2022-05-30 | 6% -> 20% (+14%) | 1,199 / 20,999 | 2,251 / 11,390 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Luxembourg | 2022-05-30 | 9% -> 23% (+14%) | 104 / 1,129 | 325 / 1,421 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Switzerland | 2022-06-27 | 4% -> 18% (+14%) | 45 / 1,126 | 158 / 900 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Netherlands | 2022-06-27 | 25% -> 37% (+12%) | 449 / 1,830 | 863 / 2,337 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Ireland | 2022-05-30 | 5% -> 18% (+12%) | 245 / 4,579 | 221 / 1,251 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Greece | 2022-05-30 | 23% -> 35% (+12%) | 170 / 746 | 36 / 103 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Latvia | 2022-05-30 | 35% -> 45% (+10%) | 8 / 23 | 89 / 199 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Portugal | 2022-05-30 | 2% -> 6% (+4%) | 16 / 905 | 45 / 764 |
Lineage | WHO Label | Country | 2-Week Period | Change | Previous Support | Current Support | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.5BA.5.5 (Omicron) Mutations
|
Omicron | Guatemala | 2022-06-27 | 2% -> 36% (+35%) | 1 / 61 | 17 / 47 | ||||||
BA.5.2.2BA.5.2.2 (Omicron) Mutations
|
Omicron | Martinique | 2022-06-27 | 62% -> 91% (+29%) | 55 / 89 | 50 / 55 | ||||||
BA.4.6BA.4.6 (Omicron) Mutations
|
Omicron | Dominican Republic | 2022-07-25 | 40% -> 65% (+26%) | 38 / 96 | 17 / 26 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Mexico | 2022-06-27 | 10% -> 30% (+20%) | 167 / 1,708 | 745 / 2,464 | ||||||
BE.1BE.1 (Omicron) Mutations
|
Omicron | Costa Rica | 2022-06-27 | 2% -> 23% (+20%) | 5 / 201 | 79 / 345 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | United States | 2022-05-30 | 40% -> 58% (+19%) | 25,991 / 65,754 | 45,081 / 77,192 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Canada | 2022-06-27 | 2% -> 19% (+17%) | 127 / 5,901 | 1,312 / 6,979 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Puerto Rico | 2022-06-27 | 3% -> 17% (+14%) | 13 / 388 | 25 / 143 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Sint Maarten | 2022-06-27 | 8% -> 20% (+12%) | 2 / 26 | 10 / 50 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | U.S. Virgin Islands | 2022-05-30 | 58% -> 68% (+9%) | 21 / 36 | 25 / 37 |
Lineage | WHO Label | Country | 2-Week Period | Change | Previous Support | Current Support | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Iran | 2022-06-27 | 8% -> 69% (+61%) | 3 / 38 | 20 / 29 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Hong Kong | 2022-07-11 | 1% -> 48% (+47%) | 3 / 289 | 23 / 48 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Brunei | 2022-06-27 | 10% -> 52% (+42%) | 10 / 101 | 88 / 168 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Philippines | 2022-06-27 | 27% -> 67% (+40%) | 47 / 174 | 114 / 171 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Thailand | 2022-06-27 | 6% -> 43% (+37%) | 40 / 694 | 185 / 434 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Malaysia | 2022-06-27 | 9% -> 45% (+36%) | 35 / 389 | 130 / 292 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Pakistan | 2022-06-27 | 25% -> 56% (+31%) | 13 / 53 | 89 / 160 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Georgia | 2022-05-30 | 10% -> 40% (+30%) | 4 / 39 | 17 / 42 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Vietnam | 2022-05-30 | 19% -> 48% (+29%) | 16 / 83 | 23 / 48 | ||||||
BA.2.76BA.2.76 (Omicron) Mutations
|
Omicron | Nepal | 2022-06-27 | 2% -> 28% (+25%) | 1 / 43 | 10 / 36 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Indonesia | 2022-06-27 | 44% -> 66% (+22%) | 267 / 607 | 1,146 / 1,736 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | South Korea | 2022-06-27 | 3% -> 22% (+19%) | 72 / 2,206 | 342 / 1,522 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Singapore | 2022-06-27 | 14% -> 32% (+19%) | 96 / 706 | 230 / 710 | ||||||
BA.2.75BA.2.75 (Omicron) Mutations
|
Omicron | India | 2022-07-25 | 26% -> 42% (+17%) | 353 / 1,376 | 27 / 64 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Kuwait | 2022-06-27 | 32% -> 48% (+16%) | 13 / 40 | 15 / 31 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Japan | 2022-06-27 | 2% -> 17% (+15%) | 128 / 7,724 | 1,606 / 9,645 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Israel | 2022-05-30 | 6% -> 21% (+15%) | 376 / 5,885 | 1,325 / 6,270 | ||||||
BA.5.3.1BA.5.3.1 (Omicron) Mutations
|
Omicron | Bangladesh | 2022-06-27 | 67% -> 79% (+12%) | 16 / 24 | 37 / 47 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | Cambodia | 2022-07-11 | 35% -> 46% (+11%) | 14 / 40 | 33 / 71 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Sri Lanka | 2022-07-11 | 44% -> 50% (+6%) | 12 / 27 | 10 / 20 |
Lineage | WHO Label | Country | 2-Week Period | Change | Previous Support | Current Support | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Australia | 2022-06-27 | 5% -> 25% (+20%) | 254 / 5,337 | 1,271 / 5,171 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | New Zealand | 2022-05-30 | 39% -> 50% (+11%) | 496 / 1,273 | 510 / 1,014 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Northern Mariana Islands | 2022-06-27 | 3% -> 11% (+9%) | 1 / 37 | 5 / 44 |
Lineage | WHO Label | Country | 2-Week Period | Change | Previous Support | Current Support | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.2.2BA.5.2.2 (Omicron) Mutations
|
Omicron | French Guiana | 2022-06-27 | 17% -> 64% (+47%) | 18 / 106 | 83 / 129 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Curacao | 2022-06-27 | 7% -> 53% (+45%) | 4 / 56 | 20 / 38 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Chile | 2022-06-27 | 20% -> 49% (+29%) | 211 / 1,079 | 535 / 1,103 | ||||||
BA.5.6BA.5.6 (Omicron) Mutations
|
Omicron | Aruba | 2022-06-27 | 34% -> 57% (+23%) | 10 / 29 | 39 / 68 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Brazil | 2022-05-30 | 14% -> 37% (+23%) | 498 / 3,456 | 1,659 / 4,494 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Peru | 2022-06-27 | 4% -> 25% (+20%) | 49 / 1,089 | 380 / 1,523 | ||||||
BA.5.6BA.5.6 (Omicron) Mutations
|
Omicron | Bonaire | 2022-06-27 | 4% -> 23% (+19%) | 1 / 23 | 15 / 64 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Colombia | 2022-06-27 | 17% -> 35% (+18%) | 112 / 643 | 91 / 257 | ||||||
BA.5.1BA.5.1 (Omicron) Mutations
|
Omicron | Ecuador | 2022-06-27 | 1% -> 18% (+17%) | 2 / 186 | 22 / 120 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Trinidad And Tobago | 2022-05-30 | 33% -> 49% (+16%) | 19 / 58 | 33 / 67 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Paraguay | 2022-05-30 | 16% -> 32% (+15%) | 11 / 68 | 41 / 130 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | Argentina | 2022-05-30 | 23% -> 38% (+15%) | 25 / 107 | 43 / 113 |
Lineage | WHO Label | Country | 2-Week Period | Change | Previous Support | Current Support | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Uganda | 2022-06-27 | 2% -> 57% (+54%) | 1 / 41 | 13 / 23 | ||||||
BA.2BA.2 (Omicron) Mutations
|
Omicron | France (Réunion Island) | 2022-05-30 | 34% -> 68% (+34%) | 81 / 241 | 814 / 1,201 | ||||||
BE.1.1BE.1.1 (Omicron) Mutations
|
Omicron | Nigeria | 2022-07-11 | 48% -> 75% (+27%) | 12 / 25 | 24 / 32 | ||||||
BE.1BE.1 (Omicron) Mutations
|
Omicron | Mauritius | 2022-06-27 | 2% -> 25% (+23%) | 1 / 63 | 11 / 44 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Morocco | 2022-05-30 | 4% -> 20% (+15%) | 1 / 23 | 8 / 41 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Ghana | 2022-05-30 | 56% -> 70% (+14%) | 14 / 25 | 65 / 93 | ||||||
BA.5.2BA.5.2 (Omicron) Mutations
|
Omicron | South Africa | 2022-07-11 | 7% -> 18% (+11%) | 11 / 169 | 21 / 118 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Botswana | 2022-06-27 | 62% -> 71% (+9%) | 136 / 220 | 53 / 75 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Kenya | 2022-06-27 | 62% -> 68% (+5%) | 132 / 212 | 135 / 200 |
Lineage | WHO Label | State | 2-Week Period | Change | Previous Support | Current Support | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | South Dakota | 2022-06-27 | 4% -> 34% (+30%) | 3 / 79 | 27 / 79 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Montana | 2022-06-27 | 2% -> 29% (+27%) | 3 / 142 | 35 / 119 | ||||||
BA.5.5BA.5.5 (Omicron) Mutations
|
Omicron | Vermont | 2022-07-11 | 5% -> 32% (+27%) | 1 / 22 | 13 / 41 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Maryland | 2022-05-30 | 39% -> 65% (+26%) | 309 / 793 | 907 / 1,389 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | New York | 2022-05-30 | 36% -> 63% (+26%) | 2,277 / 6,268 | 4,618 / 7,380 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Delaware | 2022-05-30 | 48% -> 74% (+26%) | 77 / 160 | 235 / 317 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | New Jersey | 2022-05-30 | 40% -> 66% (+26%) | 729 / 1,810 | 2,229 / 3,382 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Rhode Island | 2022-05-30 | 40% -> 65% (+25%) | 100 / 251 | 383 / 591 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Nevada | 2022-06-27 | 10% -> 35% (+25%) | 144 / 1,494 | 298 / 863 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | New Hampshire | 2022-05-30 | 38% -> 62% (+25%) | 51 / 136 | 100 / 161 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Arizona | 2022-06-27 | 2% -> 26% (+24%) | 47 / 2,014 | 381 / 1,469 | ||||||
BA.4.1BA.4.1 (Omicron) Mutations
|
Omicron | Tennessee | 2022-07-25 | 6% -> 30% (+24%) | 10 / 156 | 6 / 20 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Alaska | 2022-06-27 | 2% -> 25% (+24%) | 2 / 101 | 39 / 153 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Massachusetts | 2022-05-30 | 39% -> 62% (+23%) | 363 / 936 | 325 / 523 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | New Mexico | 2022-06-27 | 5% -> 28% (+23%) | 24 / 449 | 67 / 237 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Utah | 2022-05-30 | 40% -> 63% (+23%) | 1,428 / 3,564 | 2,736 / 4,362 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Missouri | 2022-05-30 | 32% -> 54% (+22%) | 94 / 292 | 227 / 418 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Mississippi | 2022-05-30 | 24% -> 46% (+22%) | 49 / 200 | 133 / 288 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Pennsylvania | 2022-05-30 | 49% -> 70% (+21%) | 383 / 784 | 1,283 / 1,832 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | District of Columbia | 2022-05-30 | 38% -> 59% (+21%) | 284 / 747 | 573 / 977 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | California | 2022-06-27 | 4% -> 24% (+20%) | 513 / 11,845 | 3,607 / 14,784 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Georgia | 2022-05-30 | 40% -> 59% (+19%) | 224 / 567 | 715 / 1,214 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | North Carolina | 2022-05-30 | 44% -> 63% (+19%) | 1,148 / 2,626 | 2,328 / 3,694 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Virginia | 2022-05-30 | 41% -> 61% (+19%) | 657 / 1,587 | 1,655 / 2,730 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Texas | 2022-05-30 | 34% -> 53% (+19%) | 1,850 / 5,506 | 2,946 / 5,588 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Idaho | 2022-06-27 | 1% -> 20% (+19%) | 2 / 177 | 59 / 293 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Oklahoma | 2022-05-30 | 36% -> 55% (+19%) | 9 / 25 | 22 / 40 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Washington | 2022-06-27 | 6% -> 25% (+19%) | 194 / 3,039 | 693 / 2,774 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Michigan | 2022-05-30 | 48% -> 67% (+19%) | 216 / 446 | 688 / 1,027 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Hawaii | 2022-06-27 | 1% -> 19% (+19%) | 6 / 675 | 97 / 499 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Maine | 2022-05-30 | 48% -> 66% (+19%) | 103 / 216 | 47 / 71 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Colorado | 2022-05-30 | 40% -> 59% (+18%) | 2,231 / 5,525 | 2,336 / 3,971 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Iowa | 2022-05-30 | 40% -> 58% (+18%) | 149 / 371 | 217 / 372 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Louisiana | 2022-06-27 | 6% -> 24% (+18%) | 33 / 560 | 247 / 1,045 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Ohio | 2022-06-27 | 3% -> 20% (+17%) | 20 / 745 | 212 / 1,058 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Minnesota | 2022-06-27 | 2% -> 19% (+17%) | 20 / 993 | 140 / 726 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Connecticut | 2022-05-30 | 47% -> 64% (+17%) | 382 / 811 | 743 / 1,157 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Oregon | 2022-06-27 | 3% -> 20% (+17%) | 28 / 856 | 138 / 678 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Wyoming | 2022-06-27 | 1% -> 17% (+16%) | 1 / 190 | 9 / 53 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Nebraska | 2022-06-27 | 5% -> 21% (+16%) | 28 / 580 | 129 / 608 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Indiana | 2022-05-30 | 44% -> 60% (+16%) | 150 / 342 | 232 / 387 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Illinois | 2022-05-30 | 37% -> 53% (+16%) | 795 / 2,172 | 1,216 / 2,316 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | North Dakota | 2022-05-30 | 38% -> 54% (+16%) | 138 / 365 | 259 / 483 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Wisconsin | 2022-06-27 | 2% -> 16% (+14%) | 26 / 1,280 | 150 / 922 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | South Carolina | 2022-06-27 | 3% -> 17% (+14%) | 13 / 474 | 106 / 634 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | Florida | 2022-05-30 | 47% -> 61% (+14%) | 1,354 / 2,906 | 3,343 / 5,525 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Kentucky | 2022-06-27 | 5% -> 18% (+13%) | 6 / 111 | 64 / 354 | ||||||
BA.2.12.1BA.2.12.1 (Omicron) Mutations
|
Omicron | West Virginia | 2022-05-30 | 50% -> 62% (+13%) | 119 / 240 | 59 / 95 | ||||||
BA.5.6BA.5.6 (Omicron) Mutations
|
Omicron | Arkansas | 2022-07-25 | 6% -> 18% (+12%) | 16 / 276 | 14 / 77 | ||||||
BA.5.5BA.5.5 (Omicron) Mutations
|
Omicron | Alabama | 2022-06-27 | 13% -> 25% (+12%) | 49 / 379 | 41 / 167 | ||||||
BA.5.2.1BA.5.2.1 (Omicron) Mutations
|
Omicron | Kansas | 2022-06-27 | 4% -> 14% (+10%) | 7 / 199 | 45 / 328 |
Data Timeline
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Dashboard Timeline
August 02, 2022
07:00PM
Cache loading updated
Modified cache loading logic to avoid incomplete loading of cache
July 26, 2022
08:00PM
QC pipeline updated
Began filtering out genomes <= 25kb in length and >30% undetermined bases, and began re-calling undetermined lineages
January 07, 2022
04:30PM
Top/emerging variant graphs updated
Added overlays and country-specific information to variant graphs
November 27, 2021
01:30PM
WHO Labels Updated
Added Omicron WHO variant
November 18, 2021
04:30PM
Dashboard UI/graphs updated
Added WHO labels to lineages
April 16, 2021
08:50PM
Dashboard UI/graphs updated
Added emerging lineages tracking and top lineages tracking per US state to home page
April 16, 2021
08:00PM
Dashboard backend pipeline overhauled
Overhauled backend pipeline to automatically download and QC data from GISAID daily
April 05, 2021
03:30PM
Dashboard UI/graphs updated
Added top and emerging lineage maps and graphs. Overhauled home page
March 23, 2021
06:00PM
Dashboard performance overhauled
Added caching and refactored all graphs for performance before public release
November 13, 2020
04:00PM
Dashboard UI/graphs updated
Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!
June 15, 2020
12:00AM
Dashboard graphs upgraded
Migrated dashboard graphs from Plotly to ECharts
June 04, 2020
08:06PM
Dashboard data source changed
Upgraded dashboard to use a database vs flat files. 3x reduction in load time
June 02, 2020
12:18PM
Dashboard UI upgraded
Overhauled dashboard user interface to use bs4dash
May 26, 2020
12:00AM
Variant tracking expanded
Began tracking variants in genes ORF1a and ORF1b
May 11, 2020
12:00AM
Variant tracking expanded
Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10
April 27, 2020
12:00AM
Phylogenetic analysis added
Added tab containing viral genome evolutionary relationships
April 03, 2020
12:00AM
Automated QC pipeline created
Cleans up metadata fields such as age, collection date, gender, etc
April 02, 2020
10:36AM
First version of dashboard created
Created first version with shinydashboard. Data is ingested from flat files
March 31, 2020
12:00AM
Patient metadata tracking started
Began downloading patient metadata for all genomes
January 10, 2020
12:00AM
First data downloaded
Began downloading genomes from GISAID and subsequent variant calling
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