Regeneron COVID-19 Dashboard

Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

12,059,728

SARS-CoV-2 (hCoV-19) genomes

August 11, 2022
12:29 AM ET

Last data update

Top Lineages Per Country (Past 12 Weeks)

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

77%

2,691

3,482

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Russia

51%

170

332

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Latvia

44%

222

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Republic of Serbia

43%

216

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

42%

2,201

5,198

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

41%

4,109

10,121

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

37%

14,509

39,569

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

35%

1,276

3,684

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

34%

2,903

8,562

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

33%

2,839

8,576

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

31%

481

1,559

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

30%

586

1,938

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

30%

3,430

11,525

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

30%

10,174

34,287

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

29%

203

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

28%

155

562

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

27%

2,565

9,404

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

27%

283

1,052

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iceland

26%

229

873

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

26%

517

1,972

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

26%

531

2,032

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

26%

1,941

7,609

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

25%

359

1,436

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

24%

19,702

83,027

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iceland

23%

201

873

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

23%

127

562

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

22%

1,116

4,962

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

22%

373

1,672

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

22%

634

2,912

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

21%

558

2,597

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

20%

2,277

11,525

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

20%

9,091

46,264

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

19%

195

1,052

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

19%

8,561

46,264

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

17%

8,064

46,264

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

16%

233

1,436

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

16%

418

2,597

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

16%

314

1,972

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

16%

786

4,962

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

16%

1,483

9,404

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

15%

241

1,559

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

15%

237

1,559

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Russia

15%

332

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Latvia

15%

222

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

14%

203

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

13%

343

2,597

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

13%

4,437

34,287

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

13%

1,078

8,576

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

12%

451

3,684

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

12%

10,060

83,027

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

12%

310

2,597

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

12%

203

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

12%

228

1,938

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

11%

332

2,912

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

11%

1,153

10,121

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

11%

190

1,672

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

11%

116

1,052

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (56%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

11%

838

7,609

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (80%), K417N (81%), N440K (78%), L452R (80%), S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Slovakia

11%

223

2,032

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

11%

939

8,562

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

11%

4,335

39,569

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

11%

540

4,962

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

11%

203

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

11%

818

7,609

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (82%), S477N, T478K, E484A, Q493R, Q498R (89%), N501Y (90%), Y505H (90%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

11%

562

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

10%

202

1,938

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

10%

298

2,912

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

10%

196

1,938

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

10%

523

5,198

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

10%

860

8,576

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.5.2.2BA.5.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

73%

156

213

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

57%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Panama

56%

162

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Jamaica

53%

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

47%

483

1,026

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

45%

109

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Dominican Republic

32%

238

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

United States

32%

87,923

271,892

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

28%

134

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

27%

2,326

8,766

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Jamaica

26%

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Canada

25%

6,534

25,879

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Dominican Republic

24%

238

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (56%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

23%

264

1,158

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Mexico

23%

1,992

8,766

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

18%

134

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F (89%), S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

17%

192

1,158

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

16%

109

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United States

14%

39,408

271,892

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

14%

3,718

25,879

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

14%

109

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Dominican Republic

13%

238

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

13%

134

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

13%

155

1,158

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

12%

3,173

25,879

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

11%

213

XAFXAF Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Panama

11%

162

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

11%

114

1,026

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

11%

125

1,158

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Panama

10%

162

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2.3.7BA.2.3.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, K97E, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, G1251V (69%)

Omicron

Taiwan

89%

253

284

BA.5.3.1BA.5.3.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bangladesh

68%

184

271

BA.2.2BA.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, I1221T

Omicron

Hong Kong

65%

914

1,407

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

63%

3,556

5,641

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

56%

340

603

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

54%

392

721

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kazakhstan

50%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kuwait

40%

164

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brunei

38%

167

442

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

37%

163

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iran

36%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

35%

243

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kazakhstan

32%

BA.2.38BA.2.38 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F (87%), S373P (88%), S375F (87%), T376A (87%), D405N (86%), R408S (80%), K417T (83%), N440K (56%), S477N (69%), T478K (67%), E484A (70%), Q493R (69%), Q498R (68%), N501Y (68%), Y505H (67%)
Spike (non-RBD)	T19I, L24- (64%), P25- (64%), P26- (64%), A27S (64%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K (86%), D796Y, Q954H, N969K

Omicron

Nepal

31%

137

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

31%

579

1,866

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iran

31%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

31%

401

1,311

BA.2.79BA.2.79 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (88%), N440K (80%), N450D (70%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, Y248S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kuwait

29%

164

BA.2.3.2BA.2.3.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (77%), S477N (82%), T478K (82%), E484A (82%), Q493R (82%), Q498R (82%), N501Y (83%), Y505H (83%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

27%

243

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

27%

350

1,311

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

26%

877

3,361

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brunei

23%

102

442

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

23%

137

603

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (80%), K417N (81%), N440K (78%), L452R (80%), S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Israel

22%

7,933

35,420

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

22%

103

BA.2.38BA.2.38 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F (87%), S373P (88%), S375F (87%), T376A (87%), D405N (86%), R408S (80%), K417T (83%), N440K (56%), S477N (69%), T478K (67%), E484A (70%), Q493R (69%), Q498R (68%), N501Y (68%), Y505H (67%)
Spike (non-RBD)	T19I, L24- (64%), P25- (64%), P26- (64%), A27S (64%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K (86%), D796Y, Q954H, N969K

Omicron

India

22%

3,416

15,720

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

22%

403

1,866

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

20%

1,200

5,875

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

20%

137

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

18%

4,867

26,366

BA.2.76BA.2.76 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (68%), S477N (77%), T478K (77%), E484A (77%), Q493R (76%), Q498R (74%), N501Y (76%), Y505H (76%)
Spike (non-RBD)	T19I, L24- (73%), P25- (73%), P26- (73%), A27S (74%), G142D, V213G, Y248N, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

18%

2,772

15,720

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bangladesh

16%

271

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

16%

2,448

15,720

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

16%

103

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

16%

103

BA.2.76BA.2.76 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (68%), S477N (77%), T478K (77%), E484A (77%), Q493R (76%), Q498R (74%), N501Y (76%), Y505H (76%)
Spike (non-RBD)	T19I, L24- (73%), P25- (73%), P26- (73%), A27S (74%), G142D, V213G, Y248N, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

15%

137

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

15%

243

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (80%), K417N (81%), N440K (78%), L452R (80%), S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Brunei

15%

442

BA.2.9.5BA.2.9.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

15%

276

1,866

BA.2.40.1BA.2.40.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417T, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

14%

190

1,311

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

14%

810

5,875

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

14%

4,826

35,420

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

13%

453

3,361

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

13%

788

5,875

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F (87%), S373P (87%), S375F (85%), T376A (84%), D405N, R408S, K417N (86%), N440K (88%), G446S, N460K, S477N, T478K, E484A, Q498R (88%), N501Y (90%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (73%), P25- (74%), P26- (74%), A27S (79%), G142D (54%), K147E (79%), W152R (82%), F157L (84%), I210V (88%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

12%

137

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

12%

4,295

35,420

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

12%

4,157

35,420

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

11%

361

3,361

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

10%

2,647

26,366

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Northern Mariana Islands

65%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

40%

1,200

2,988

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

22%

4,321

19,209

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

17%

3,295

19,209

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

13%

2,487

19,209

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (79%), S477N (87%), T478K (87%), E484A (87%), Q493R (82%), Q498R (84%), N501Y (85%), Y505H (86%)
Spike (non-RBD)	T19I, L24- (86%), P25- (86%), P26- (86%), A27S (86%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

12%

347

2,988

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.5.2.2BA.5.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

45%

225

496

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

42%

173

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

37%

1,714

4,608

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

30%

259

865

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

28%

169

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

27%

439

1,605

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Paraguay

27%

199

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

26%

419

1,605

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Peru

25%

1,133

4,519

BA.2.40.1BA.2.40.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417T, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

24%

120

496

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

23%

157

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

22%

350

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F (89%), S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Paraguay

22%

199

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

21%

2,352

10,998

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

21%

2,301

10,998

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

20%

376

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Colombia

20%

313

1,605

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

19%

2,104

10,998

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

18%

376

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

17%

747

4,519

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

16%

169

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

14%

157

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

12%

157

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (56%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

12%

350

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Chile

12%

536

4,608

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Argentina

11%

350

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

11%

496

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (56%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

11%

1,217

10,998

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Aruba

11%

173

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

11%

865

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

11%

483

4,519

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

11%

865

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (82%), S477N, T478K, E484A, Q493R, Q498R (89%), N501Y (90%), Y505H (90%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

10%

376

BA.2.30BA.2.30 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

10%

169

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Curacao

10%

169

BA.2.56BA.2.56 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (85%), L452M, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Paraguay

10%

199

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

10%

453

4,519

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ghana

67%

118

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Zambia

64%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kenya

62%

580

929

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

61%

409

674

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nigeria

60%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Morocco

55%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cabo Verde

54%

102

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Uganda

50%

113

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

49%

918

1,884

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (56%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

24%

310

1,308

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (56%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Zambia

20%

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

19%

252

1,308

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Senegal

19%

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Uganda

17%

113

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cabo Verde

17%

102

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

16%

166

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (56%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

16%

108

674

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Morocco

14%

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

14%

166

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

14%

258

1,884

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Cabo Verde

13%

102

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (56%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ghana

13%

118

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Zambia

12%

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kenya

12%

115

929

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Senegal

12%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

12%

166

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

12%

157

1,308

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

11%

166

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F (89%), S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

11%

166

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Senegal

11%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Morocco

11%

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

State

Percent

Lineage Count

Total Count

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Wyoming

46%

193

421

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Hawaii

43%

968

2,260

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Colorado

42%

5,056

11,991

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maine

42%

167

399

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Mexico

41%

469

1,135

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arkansas

41%

420

1,025

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Florida

40%

5,502

13,778

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Vermont

40%

168

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Utah

40%

4,909

12,331

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Pennsylvania

38%

1,952

5,077

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Virginia

38%

2,731

7,122

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Hampshire

38%

186

488

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Delaware

38%

374

985

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Wisconsin

37%

1,480

3,970

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Montana

37%

184

498

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

North Carolina

37%

4,303

11,691

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maryland

36%

1,476

4,095

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Connecticut

35%

1,363

3,864

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Alabama

35%

422

1,198

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Arizona

35%

2,087

5,970

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Michigan

35%

1,154

3,327

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Jersey

34%

3,510

10,245

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

West Virginia

34%

303

888

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Oklahoma

34%

104

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Washington

33%

3,563

10,665

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Rhode Island

33%

597

1,789

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

South Carolina

33%

629

1,904

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

District of Columbia

33%

1,044

3,165

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Oregon

33%

899

2,755

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Iowa

31%

461

1,484

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Georgia

30%

1,243

4,099

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

California

30%

15,174

50,242

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Nevada

30%

1,103

3,656

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Massachusetts

30%

928

3,132

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Tennessee

29%

252

868

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Idaho

29%

290

1,003

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New York

29%

8,422

29,145

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Minnesota

29%

911

3,189

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

South Dakota

28%

258

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Indiana

27%

542

1,980

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Illinois

27%

2,517

9,204

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

North Dakota

27%

492

1,828

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Ohio

26%

876

3,325

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Texas

26%

5,958

23,240

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Nebraska

25%

706

2,783

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Missouri

25%

453

1,788

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Louisiana

25%

813

3,273

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Mississippi

24%

207

853

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

23%

286

1,232

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Kansas

23%

320

1,394

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alaska

23%

130

568

*Criteria: Minimum of 20 samples per state.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

2022-05-30

9% -> 60% (+51%)

5 / 53

15 / 25

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

2022-05-30

31% -> 60% (+29%)

199 / 634

191 / 316

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

2022-05-30

15% -> 40% (+25%)

236 / 1,600

975 / 2,424

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

2022-05-30

14% -> 38% (+25%)

57 / 417

98 / 256

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

2022-07-25

7% -> 29% (+22%)

6 / 88

14 / 48

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Republic of Serbia

2022-05-30

36% -> 57% (+21%)

35 / 98

53 / 93

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

2022-05-30

23% -> 44% (+21%)

301 / 1,298

562 / 1,266

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

2022-05-30

13% -> 33% (+20%)

2,043 / 15,667

4,568 / 13,858

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

2022-05-30

16% -> 36% (+20%)

124 / 764

148 / 414

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

2022-06-27

28% -> 47% (+19%)

758 / 2,688

1,407 / 2,975

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

2022-05-30

11% -> 29% (+19%)

40 / 369

123 / 418

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

2022-05-30

10% -> 29% (+19%)

199 / 1,977

282 / 986

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

2022-05-30

12% -> 30% (+18%)

20 / 171

107 / 355

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

2022-06-27

11% -> 29% (+18%)

29 / 276

197 / 681

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Russia

2022-07-11

15% -> 33% (+18%)

20 / 132

25 / 75

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iceland

2022-06-27

15% -> 32% (+18%)

15 / 103

33 / 102

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (82%), S477N, T478K, E484A, Q493R, Q498R (89%), N501Y (90%), Y505H (90%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

2022-05-30

24% -> 41% (+17%)

29 / 121

53 / 128

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

2022-05-30

8% -> 24% (+16%)

836 / 10,177

1,434 / 5,899

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

2022-06-27

19% -> 35% (+16%)

467 / 2,416

897 / 2,554

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

2022-06-27

10% -> 26% (+16%)

59 / 564

206 / 793

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

2022-05-30

11% -> 26% (+15%)

1,047 / 9,446

2,416 / 9,163

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

2022-05-30

6% -> 20% (+14%)

1,199 / 20,999

2,251 / 11,390

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

2022-05-30

9% -> 23% (+14%)

104 / 1,129

325 / 1,421

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

2022-06-27

4% -> 18% (+14%)

45 / 1,126

158 / 900

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

2022-06-27

25% -> 37% (+12%)

449 / 1,830

863 / 2,337

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

2022-05-30

5% -> 18% (+12%)

245 / 4,579

221 / 1,251

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

2022-05-30

23% -> 35% (+12%)

170 / 746

36 / 103

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Latvia

2022-05-30

35% -> 45% (+10%)

8 / 23

89 / 199

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

2022-05-30

2% -> 6% (+4%)

16 / 905

45 / 764

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

2022-06-27

2% -> 36% (+35%)

1 / 61

17 / 47

BA.5.2.2BA.5.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

2022-06-27

62% -> 91% (+29%)

55 / 89

50 / 55

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Dominican Republic

2022-07-25

40% -> 65% (+26%)

38 / 96

17 / 26

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

2022-06-27

10% -> 30% (+20%)

167 / 1,708

745 / 2,464

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F (89%), S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

2022-06-27

2% -> 23% (+20%)

5 / 201

79 / 345

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

United States

2022-05-30

40% -> 58% (+19%)

25,991 / 65,754

45,081 / 77,192

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

2022-06-27

2% -> 19% (+17%)

127 / 5,901

1,312 / 6,979

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

2022-06-27

3% -> 17% (+14%)

13 / 388

25 / 143

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

2022-06-27

8% -> 20% (+12%)

2 / 26

10 / 50

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

2022-05-30

58% -> 68% (+9%)

21 / 36

25 / 37

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iran

2022-06-27

8% -> 69% (+61%)

3 / 38

20 / 29

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

2022-07-11

1% -> 48% (+47%)

3 / 289

23 / 48

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brunei

2022-06-27

10% -> 52% (+42%)

10 / 101

88 / 168

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

2022-06-27

27% -> 67% (+40%)

47 / 174

114 / 171

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

2022-06-27

6% -> 43% (+37%)

40 / 694

185 / 434

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

2022-06-27

9% -> 45% (+36%)

35 / 389

130 / 292

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

2022-06-27

25% -> 56% (+31%)

13 / 53

89 / 160

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

2022-05-30

10% -> 40% (+30%)

4 / 39

17 / 42

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

2022-05-30

19% -> 48% (+29%)

16 / 83

23 / 48

BA.2.76BA.2.76 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (68%), S477N (77%), T478K (77%), E484A (77%), Q493R (76%), Q498R (74%), N501Y (76%), Y505H (76%)
Spike (non-RBD)	T19I, L24- (73%), P25- (73%), P26- (73%), A27S (74%), G142D, V213G, Y248N, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

2022-06-27

2% -> 28% (+25%)

1 / 43

10 / 36

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

2022-06-27

44% -> 66% (+22%)

267 / 607

1,146 / 1,736

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

2022-06-27

3% -> 22% (+19%)

72 / 2,206

342 / 1,522

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

2022-06-27

14% -> 32% (+19%)

96 / 706

230 / 710

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F (87%), S373P (87%), S375F (85%), T376A (84%), D405N, R408S, K417N (86%), N440K (88%), G446S, N460K, S477N, T478K, E484A, Q498R (88%), N501Y (90%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (73%), P25- (74%), P26- (74%), A27S (79%), G142D (54%), K147E (79%), W152R (82%), F157L (84%), I210V (88%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

2022-07-25

26% -> 42% (+17%)

353 / 1,376

27 / 64

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kuwait

2022-06-27

32% -> 48% (+16%)

13 / 40

15 / 31

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

2022-06-27

2% -> 17% (+15%)

128 / 7,724

1,606 / 9,645

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

2022-05-30

6% -> 21% (+15%)

376 / 5,885

1,325 / 6,270

BA.5.3.1BA.5.3.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bangladesh

2022-06-27

67% -> 79% (+12%)

16 / 24

37 / 47

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

2022-07-11

35% -> 46% (+11%)

14 / 40

33 / 71

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sri Lanka

2022-07-11

44% -> 50% (+6%)

12 / 27

10 / 20

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

2022-06-27

5% -> 25% (+20%)

254 / 5,337

1,271 / 5,171

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

2022-05-30

39% -> 50% (+11%)

496 / 1,273

510 / 1,014

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Northern Mariana Islands

2022-06-27

3% -> 11% (+9%)

1 / 37

5 / 44

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.2.2BA.5.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

2022-06-27

17% -> 64% (+47%)

18 / 106

83 / 129

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

2022-06-27

7% -> 53% (+45%)

4 / 56

20 / 38

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

2022-06-27

20% -> 49% (+29%)

211 / 1,079

535 / 1,103

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

2022-06-27

34% -> 57% (+23%)

10 / 29

39 / 68

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

2022-05-30

14% -> 37% (+23%)

498 / 3,456

1,659 / 4,494

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

2022-06-27

4% -> 25% (+20%)

49 / 1,089

380 / 1,523

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

2022-06-27

4% -> 23% (+19%)

1 / 23

15 / 64

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

2022-06-27

17% -> 35% (+18%)

112 / 643

91 / 257

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

2022-06-27

1% -> 18% (+17%)

2 / 186

22 / 120

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

2022-05-30

33% -> 49% (+16%)

19 / 58

33 / 67

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Paraguay

2022-05-30

16% -> 32% (+15%)

11 / 68

41 / 130

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

2022-05-30

23% -> 38% (+15%)

25 / 107

43 / 113

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Uganda

2022-06-27

2% -> 57% (+54%)

1 / 41

13 / 23

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

2022-05-30

34% -> 68% (+34%)

81 / 241

814 / 1,201

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nigeria

2022-07-11

48% -> 75% (+27%)

12 / 25

24 / 32

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F (89%), S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

2022-06-27

2% -> 25% (+23%)

1 / 63

11 / 44

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Morocco

2022-05-30

4% -> 20% (+15%)

1 / 23

8 / 41

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ghana

2022-05-30

56% -> 70% (+14%)

14 / 25

65 / 93

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

2022-07-11

7% -> 18% (+11%)

11 / 169

21 / 118

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

2022-06-27

62% -> 71% (+9%)

136 / 220

53 / 75

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kenya

2022-06-27

62% -> 68% (+5%)

132 / 212

135 / 200

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

State

2-Week Period

Change

Previous Support

Current Support

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Dakota

2022-06-27

4% -> 34% (+30%)

3 / 79

27 / 79

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montana

2022-06-27

2% -> 29% (+27%)

3 / 142

35 / 119

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vermont

2022-07-11

5% -> 32% (+27%)

1 / 22

13 / 41

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maryland

2022-05-30

39% -> 65% (+26%)

309 / 793

907 / 1,389

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New York

2022-05-30

36% -> 63% (+26%)

2,277 / 6,268

4,618 / 7,380

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Delaware

2022-05-30

48% -> 74% (+26%)

77 / 160

235 / 317

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Jersey

2022-05-30

40% -> 66% (+26%)

729 / 1,810

2,229 / 3,382

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Rhode Island

2022-05-30

40% -> 65% (+25%)

100 / 251

383 / 591

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nevada

2022-06-27

10% -> 35% (+25%)

144 / 1,494

298 / 863

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Hampshire

2022-05-30

38% -> 62% (+25%)

51 / 136

100 / 161

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arizona

2022-06-27

2% -> 26% (+24%)

47 / 2,014

381 / 1,469

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Tennessee

2022-07-25

6% -> 30% (+24%)

10 / 156

6 / 20

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alaska

2022-06-27

2% -> 25% (+24%)

2 / 101

39 / 153

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Massachusetts

2022-05-30

39% -> 62% (+23%)

363 / 936

325 / 523

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Mexico

2022-06-27

5% -> 28% (+23%)

24 / 449

67 / 237

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Utah

2022-05-30

40% -> 63% (+23%)

1,428 / 3,564

2,736 / 4,362

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Missouri

2022-05-30

32% -> 54% (+22%)

94 / 292

227 / 418

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Mississippi

2022-05-30

24% -> 46% (+22%)

49 / 200

133 / 288

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Pennsylvania

2022-05-30

49% -> 70% (+21%)

383 / 784

1,283 / 1,832

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

District of Columbia

2022-05-30

38% -> 59% (+21%)

284 / 747

573 / 977

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

California

2022-06-27

4% -> 24% (+20%)

513 / 11,845

3,607 / 14,784

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Georgia

2022-05-30

40% -> 59% (+19%)

224 / 567

715 / 1,214

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

North Carolina

2022-05-30

44% -> 63% (+19%)

1,148 / 2,626

2,328 / 3,694

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Virginia

2022-05-30

41% -> 61% (+19%)

657 / 1,587

1,655 / 2,730

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Texas

2022-05-30

34% -> 53% (+19%)

1,850 / 5,506

2,946 / 5,588

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Idaho

2022-06-27

1% -> 20% (+19%)

2 / 177

59 / 293

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Oklahoma

2022-05-30

36% -> 55% (+19%)

9 / 25

22 / 40

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Washington

2022-06-27

6% -> 25% (+19%)

194 / 3,039

693 / 2,774

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Michigan

2022-05-30

48% -> 67% (+19%)

216 / 446

688 / 1,027

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hawaii

2022-06-27

1% -> 19% (+19%)

6 / 675

97 / 499

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maine

2022-05-30

48% -> 66% (+19%)

103 / 216

47 / 71

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Colorado

2022-05-30

40% -> 59% (+18%)

2,231 / 5,525

2,336 / 3,971

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Iowa

2022-05-30

40% -> 58% (+18%)

149 / 371

217 / 372

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Louisiana

2022-06-27

6% -> 24% (+18%)

33 / 560

247 / 1,045

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ohio

2022-06-27

3% -> 20% (+17%)

20 / 745

212 / 1,058

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Minnesota

2022-06-27

2% -> 19% (+17%)

20 / 993

140 / 726

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Connecticut

2022-05-30

47% -> 64% (+17%)

382 / 811

743 / 1,157

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oregon

2022-06-27

3% -> 20% (+17%)

28 / 856

138 / 678

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wyoming

2022-06-27

1% -> 17% (+16%)

1 / 190

9 / 53

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nebraska

2022-06-27

5% -> 21% (+16%)

28 / 580

129 / 608

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Indiana

2022-05-30

44% -> 60% (+16%)

150 / 342

232 / 387

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Illinois

2022-05-30

37% -> 53% (+16%)

795 / 2,172

1,216 / 2,316

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

North Dakota

2022-05-30

38% -> 54% (+16%)

138 / 365

259 / 483

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wisconsin

2022-06-27

2% -> 16% (+14%)

26 / 1,280

150 / 922

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Carolina

2022-06-27

3% -> 17% (+14%)

13 / 474

106 / 634

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Florida

2022-05-30

47% -> 61% (+14%)

1,354 / 2,906

3,343 / 5,525

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

2022-06-27

5% -> 18% (+13%)

6 / 111

64 / 354

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

West Virginia

2022-05-30

50% -> 62% (+13%)

119 / 240

59 / 95

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arkansas

2022-07-25

6% -> 18% (+12%)

16 / 276

14 / 77

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alabama

2022-06-27

13% -> 25% (+12%)

49 / 379

41 / 167

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kansas

2022-06-27

4% -> 14% (+10%)

7 / 199

45 / 328

*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

Dashboard Timeline

August 02, 2022

07:00PM

Cache loading updated

Modified cache loading logic to avoid incomplete loading of cache

July 26, 2022

08:00PM

QC pipeline updated

Began filtering out genomes <= 25kb in length and >30% undetermined bases, and began re-calling undetermined lineages

January 07, 2022

04:30PM

Top/emerging variant graphs updated

Added overlays and country-specific information to variant graphs

November 27, 2021

01:30PM

WHO Labels Updated

Added Omicron WHO variant

November 18, 2021

04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages

April 16, 2021

08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page

April 16, 2021

08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily

April 05, 2021

03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page

March 23, 2021

06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release

November 13, 2020

04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!

June 15, 2020

12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts

June 04, 2020

08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time

June 02, 2020

12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash

May 26, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b

May 11, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10

April 27, 2020

12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships

April 03, 2020

12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc

April 02, 2020

10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files

March 31, 2020

12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes

January 10, 2020

12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling

Welcome to the Regeneron COVID-19 Dashboard

12,059,728

August 11, 2022
12:29 AM ET

12:29 AM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Cache loading updated

QC pipeline updated

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

Welcome to the Regeneron COVID-19 Dashboard

12,059,728

August 11, 202212:29 AM ET

12:29 AM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Cache loading updated

QC pipeline updated

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

August 11, 2022
12:29 AM ET