Regeneron COVID-19 Dashboard

Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

5,564,629

SARS-CoV-2 (hCoV-19) genomes

November 29, 2021
07:55 AM ET

Last data update

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Russia

88%

1,038

1,174

AY.4.5AY.4.5 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, D1259Y, E156G, F157-, G142D (61%), P681R, R158-, T19R, T95I (80%)

Delta

Lithuania

68%

2,064

3,022

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Bosnia and Herzegovina

63%

201

319

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

United Kingdom

62%

217,833

351,335

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Ireland

60%

3,350

5,578

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Finland

50%

664

1,316

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Estonia

48%

515

1,078

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Ukraine

43%

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Belgium

42%

4,659

11,201

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Spain

40%

2,192

5,437

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Slovenia

35%

1,533

4,339

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Croatia

35%

879

2,504

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Luxembourg

35%

1,048

3,022

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

France

32%

7,323

23,038

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Turkey

32%

2,339

7,367

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Denmark

31%

15,347

49,646

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Greece

31%

242

793

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Romania

30%

703

2,313

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Slovakia

30%

1,401

4,678

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Czechia

29%

1,338

4,603

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Netherlands

29%

2,385

8,266

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Bulgaria

28%

394

1,429

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Italy

26%

2,536

9,726

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Romania

26%

595

2,313

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Poland

24%

2,207

9,138

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Sweden

24%

3,547

14,771

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Switzerland

23%

4,003

17,073

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Liechtenstein

23%

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Austria

22%

410

1,829

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Greece

22%

173

793

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Kosovo

22%

166

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Austria

22%

396

1,829

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Germany

21%

10,889

51,524

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Czechia

20%

932

4,603

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Norway

20%

861

4,256

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

France

20%

4,593

23,038

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Denmark

19%

9,422

49,646

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Finland

19%

247

1,316

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Germany

18%

9,484

51,524

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Croatia

18%

456

2,504

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Kosovo

18%

166

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Netherlands

17%

1,409

8,266

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Norway

17%

723

4,256

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Liechtenstein

17%

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Poland

17%

1,529

9,138

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Croatia

17%

416

2,504

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Czechia

16%

751

4,603

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Slovakia

16%

758

4,678

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Italy

16%

1,561

9,726

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Norway

15%

652

4,256

AY.121AY.121 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (89%), F157- (90%), P681R, R158-, T19R, T95I (76%)

Delta

Turkey

15%

1,125

7,367

AY.9.2AY.9.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R

Delta

Bulgaria

15%

216

1,429

AY.46.6AY.46.6 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (88%), E156G (90%), F157-, P681R, R158-, T19R

Delta

Kosovo

15%

166

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Switzerland

15%

2,491

17,073

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Denmark

14%

7,179

49,646

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Kosovo

14%

166

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Sweden

14%

2,110

14,771

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Austria

14%

261

1,829

AY.102AY.102 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I

Delta

Portugal

14%

533

3,770

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Portugal

14%

531

3,770

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Portugal

14%

525

3,770

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Italy

14%

1,334

9,726

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Slovakia

13%

629

4,678

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Switzerland

13%

2,234

17,073

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Lithuania

13%

386

3,022

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Liechtenstein

13%

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Slovenia

13%

550

4,339

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Poland

13%

1,158

9,138

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Bosnia and Herzegovina

12%

319

AY.46.6AY.46.6 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (88%), E156G (90%), F157-, P681R, R158-, T19R

Delta

Austria

12%

218

1,829

AY.4.4AY.4.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (90%), F157-, G142D (60%), L5F (87%), P681R, R158-, S929T, T19R, T95I (80%)

Delta

Bulgaria

12%

168

1,429

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Bulgaria

12%

166

1,429

AY.5AY.5 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Portugal

12%

437

3,770

AY.4.2AY.4.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (85%), P681R, R158-, T19R, T95I, Y145H

Delta

United Kingdom

11%

39,726

351,335

AY.42AY.42 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (72%)

Delta

Liechtenstein

11%

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Poland

11%

994

9,138

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Turkey

11%

792

7,367

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Greece

10%

793

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Denmark

10%

5,090

49,646

AY.46AY.46 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (87%), T19R

Delta

Turkey

10%

755

7,367

AY.98.1AY.98.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (74%), P681R, R158-, T19R

Delta

Kosovo

10%

166

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.34AY.34 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157-, P681R, Q677H (89%), R158- (89%), T19R, T95I (82%)

Delta

Martinique

80%

AY.34AY.34 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157-, P681R, Q677H (89%), R158- (89%), T19R, T95I (82%)

Delta

France (Martinique)

71%

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Canada

57%

13,945

24,534

AY.113AY.113 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (80%), E156G (79%), F157- (78%), P681R, R158- (79%), T19R, T95I (83%)

Delta

Costa Rica

49%

171

349

AY.20AY.20 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (74%), V1104L

Delta

Mexico

48%

2,947

6,179

AY.9.2AY.9.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R

Delta

Sint Maarten

47%

107

226

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Puerto Rico

23%

299

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Sint Maarten

23%

226

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

United States

22%

74,978

345,124

AY.27AY.27 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D, P681R, Q613H (76%), R158-, T19R

Delta

Canada

22%

5,306

24,534

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Sint Maarten

21%

226

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

Puerto Rico

20%

299

AY.26AY.26 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R, V1264L

Delta

Mexico

17%

1,058

6,179

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

United States

16%

54,604

345,124

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

France (Martinique)

15%

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

United States

15%

50,285

345,124

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Martinique

14%

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Puerto Rico

14%

299

AY.100AY.100 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (87%), P681R, R158- (87%), T19R, T95I (69%)

Delta

Mexico

13%

781

6,179

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

United States

11%

39,142

345,124

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.57AY.57 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (89%), D614G, D950N, E156G, F157-, G142D (89%), P681R, R158-, T19R

Delta

Vietnam

93%

128

138

AY.29AY.29 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R, T95I

Delta

Japan

82%

1,907

2,335

AY.69AY.69 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N (84%), E156G, F157-, P681R, R158-, T19R

Delta

South Korea

77%

2,387

3,120

AY.23AY.23 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L

Delta

Indonesia

74%

239

323

AY.95AY.95 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (64%), E156G (52%), F157- (53%), L244S (83%), P681R, R158- (52%), T19R, T572I (87%)

Delta

Maldives

73%

253

345

AY.85AY.85 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (78%)

Delta

Thailand

64%

1,655

2,591

AY.23.1AY.23.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D, L1234I (77%), P681R, R158-, T19R, V1264L

Delta

Singapore

63%

1,548

2,475

AY.30AY.30 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (82%), P681R, R158- (82%), T19R

Delta

Cambodia

59%

337

575

AY.23AY.23 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L

Delta

Malaysia

53%

621

1,169

AY.106AY.106 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (86%), E156G (83%), F157- (83%), P681R, R158- (83%), S255F (62%), T19R, T95I (59%)

Delta

Jordan

47%

112

240

AY.28AY.28 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, A701S (90%), A1078S, D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R

Delta

Sri Lanka

41%

178

438

AY.23AY.23 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L

Delta

Singapore

35%

867

2,475

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

India

33%

948

2,832

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Georgia

33%

266

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Hong Kong

31%

AY.104AY.104 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R, T95I (87%), T572I (71%)

Delta

Sri Lanka

31%

137

438

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Bangladesh

31%

122

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Pakistan

30%

141

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Georgia

27%

266

AY.59AY.59 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (72%), D614G, D950N, E156G (74%), F157- (74%), P681R, R158- (74%), T19R

Delta

Malaysia

25%

289

1,169

AY.65AY.65 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N (89%), E156G, F157-, P681R, R158-, T19R, V1264L

Delta

Bahrain

24%

330

1,395

AY.85AY.85 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (78%)

Delta

Cambodia

21%

122

575

AY.30AY.30 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (82%), P681R, R158- (82%), T19R

Delta

Thailand

20%

516

2,591

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

South Korea

19%

603

3,120

AY.108AY.108 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (90%), F157-, G142D, P681R, R158- (90%), T19R, T95I

Delta

Georgia

18%

266

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Israel

18%

600

3,310

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Sri Lanka

18%

438

AY.102AY.102 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I

Delta

Bangladesh

18%

122

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Israel

18%

591

3,310

AY.120AY.120 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (81%), E156G, F157-, G142D (57%), P681R, R158-, T19R, T95I (86%)

Delta

Pakistan

16%

141

AY.122.1AY.122.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (61%), P681R, R158-, T19R, T95I (56%)

Delta

Israel

16%

534

3,310

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Hong Kong

16%

AY.79AY.79 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R

Delta

Malaysia

14%

162

1,169

AY.33AY.33 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (54%), P681R, Q613H (53%), R158-, T19R, T29A, T250I

Delta

Bahrain

13%

183

1,395

B.1.1.7B.1.1.7 (Alpha) Mutations

Protein	Mutations
Spike (RBD)	N501Y
Spike (non-RBD)	A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-

Alpha

Cambodia

12%

575

AY.120AY.120 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (81%), E156G, F157-, G142D (57%), P681R, R158-, T19R, T95I (86%)

Delta

India

11%

315

2,832

AY.102AY.102 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I

Delta

Bahrain

10%

144

1,395

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.39.1AY.39.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (89%), F157- (90%), P681R, R158- (89%), T19R, T95I (58%)

Delta

Australia

90%

6,648

7,362

AY.39.1.1AY.39.1.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R, T95I

Delta

New Zealand

68%

957

1,408

AY.24AY.24 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (57%), P681R, R158-, T19R

Delta

Papua New Guinea

47%

201

AY.23AY.23 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L

Delta

Papua New Guinea

42%

201

AY.39.1AY.39.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (89%), F157- (90%), P681R, R158- (89%), T19R, T95I (58%)

Delta

New Zealand

29%

410

1,408

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.9.2AY.9.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R

Delta

Curacao

60%

156

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Ecuador

54%

268

496

AY.99.2AY.99.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (86%), E156G (90%), F157- (90%), P681R, R158- (90%), T19R

Delta

Brazil

51%

3,918

7,618

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Trinidad And Tobago

45%

181

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Aruba

39%

214

P.1P.1 (Gamma) Mutations

Protein	Mutations
Spike (RBD)	E484K, K417T, N501Y
Spike (non-RBD)	D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F

Gamma

Trinidad And Tobago

39%

181

AY.42AY.42 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (72%)

Delta

Bonaire

37%

241

AY.9.2AY.9.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R

Delta

Bonaire

27%

241

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Aruba

26%

214

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Colombia

26%

190

730

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Chile

25%

1,366

5,379

AY.102AY.102 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I

Delta

Peru

24%

534

2,234

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Chile

22%

1,196

5,379

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Bonaire

22%

241

AY.39.2AY.39.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, K1073N, P681R, R158-, T19R, T95I (80%)

Delta

Peru

20%

454

2,234

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Chile

20%

1,069

5,379

P.1.15P.1.15 (Gamma) Mutations

Protein	Mutations
Spike (RBD)	E484K, K417T (89%), N501Y
Spike (non-RBD)	D138Y, D614G, H655Y, L18F, P26S, R190S (88%), T20N, T1027I, V1176F

Gamma

Argentina

20%

454

C.37C.37 (Lambda) Mutations

Protein	Mutations
Spike (RBD)	F490S, L452Q
Spike (non-RBD)	D253N (84%), D614G, G75V, G252- (84%), L249- (83%), P251- (83%), R246- (83%), S247- (83%), T76I, T250- (83%), T859N, Y248- (83%)

Lambda

Argentina

20%

454

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Argentina

18%

454

AY.100AY.100 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (87%), P681R, R158- (87%), T19R, T95I (69%)

Delta

Ecuador

15%

496

B.1.621B.1.621 (Mu) Mutations

Protein	Mutations
Spike (RBD)	E484K, N501Y, R346K
Spike (non-RBD)	D614G, D950N (88%), P681H, T95I, Y144S (78%), Y144T (57%), Y145N (88%), Y145S (52%), ins143T (79%), ins145N (55%)

Colombia

15%

108

730

AY.42AY.42 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (72%)

Delta

Curacao

13%

156

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Aruba

13%

214

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Peru

11%

253

2,234

AY.20AY.20 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (74%), V1104L

Delta

Colombia

11%

730

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Seychelles

87%

117

134

AY.36AY.36 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (89%), F157- (89%), P681R, R158- (89%), T19R, T95I (80%), V1104L

Delta

Nigeria

84%

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Republic of Congo

66%

AY.46AY.46 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (87%), T19R

Delta

Botswana

52%

150

289

AY.102AY.102 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I

Delta

Egypt

39%

AY.46AY.46 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (87%), T19R

Delta

Kenya

39%

122

AY.45AY.45 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R (88%), T478K
Spike (non-RBD)	D614G, D950N, E156G (79%), F157- (79%), P681R, R158- (79%), T19R

Delta

South Africa

37%

352

962

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

France (Réunion Island)

31%

277

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Mauritius

26%

AZ.5AZ.5 Mutations

Protein	Mutations
Spike (RBD)	E484K
Spike (non-RBD)	D80Y (73%), D614G, D796H, P681H, T95I, W258L (60%), Y144- (89%)

Mauritius

24%

AY.16AY.16 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (81%), E156G (52%), F157- (52%), P681R, R158- (52%), T19R

Delta

Kenya

22%

122

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Egypt

19%

AY.36AY.36 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (89%), F157- (89%), P681R, R158- (89%), T19R, T95I (80%), V1104L

Delta

Mauritius

19%

AY.39AY.39 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)

Delta

Mauritius

19%

B.1.640B.1.640 Mutations

Protein	Mutations
Spike (RBD)	F490R, N394S, N501Y, R346S, Y449N
Spike (non-RBD)	C136- (68%), D138- (68%), D614G, D936H, E96Q, F140- (68%), G142- (68%), I210T (78%), L141- (68%), N137- (68%), P9L, P139- (68%), P681H, R190S (81%), T859N, V143- (68%), Y144- (68%)

Republic of Congo

17%

AY.116AY.116 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (85%), G142D (70%), P681R, R158- (82%), T19R

Delta

Kenya

17%

122

AY.32AY.32 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (90%), E156G (80%), F157- (81%), P681R, R158- (80%), T19R, T572I

Delta

South Africa

15%

140

962

AY.33AY.33 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (54%), P681R, Q613H (53%), R158-, T19R, T29A, T250I

Delta

France (Réunion Island)

13%

277

AY.116AY.116 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (85%), G142D (70%), P681R, R158- (82%), T19R

Delta

Botswana

12%

289

AY.118AY.118 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R, T95I (81%)

Delta

France (Réunion Island)

11%

277

AY.91AY.91 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (84%), F157- (84%), P681R, R158- (84%), T19R

Delta

South Africa

10%

962

B.1.1.529B.1.1.529 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A, G339D, G446S, G496S, K417N (90%), N440K, N501Y, Q493R, Q498R, S371L, S373P, S375F, S477N, T478K, Y505H
Spike (non-RBD)	A67V, D614G, D796Y, G142D (84%), H69- (89%), H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (83%), N856K, N969K, P681H, Q954H, T95I, T547K, V70- (89%), V143- (87%), Y144- (85%), Y145- (85%), ins214EPE (84%)

Omicron

South Africa

10%

962

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

State

Percent

Lineage Count

Total Count

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Alaska

42%

705

1,678

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Missouri

38%

1,317

3,497

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Idaho

36%

1,169

3,236

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Kansas

34%

1,032

3,023

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Utah

34%

1,675

4,953

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Maine

33%

628

1,921

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Iowa

32%

1,110

3,437

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Washington

32%

2,920

9,048

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Montana

31%

722

2,316

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Wisconsin

31%

2,745

8,824

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Minnesota

30%

7,416

24,628

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Vermont

30%

1,572

5,243

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

South Carolina

29%

649

2,255

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

South Dakota

29%

203

708

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Oregon

28%

944

3,341

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Nevada

28%

1,659

5,891

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Louisiana

28%

470

1,699

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Nebraska

27%

1,093

4,109

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

Arkansas

26%

445

1,703

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

Mississippi

26%

331

1,283

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Pennsylvania

25%

2,175

8,753

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Hawaii

24%

262

1,071

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Arizona

24%

2,258

9,487

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Connecticut

24%

1,132

4,766

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Michigan

23%

2,880

12,374

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

West Virginia

23%

1,109

4,853

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

California

23%

10,538

46,312

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Wyoming

22%

654

2,912

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

Oklahoma

22%

166

750

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Illinois

22%

1,615

7,455

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

New York

21%

2,949

13,838

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

New Mexico

21%

988

4,641

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Rhode Island

21%

512

2,434

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Delaware

21%

230

1,109

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

North Carolina

21%

1,779

8,604

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

New Hampshire

20%

476

2,323

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

New Jersey

20%

1,519

7,604

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Georgia

20%

1,038

5,208

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Colorado

20%

4,563

23,203

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

Tennessee

20%

995

5,069

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

North Dakota

19%

362

1,868

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Indiana

19%

1,514

7,863

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

District of Columbia

19%

232

1,213

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Texas

19%

2,554

13,378

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Kentucky

19%

633

3,358

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Alabama

19%

222

1,187

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Virginia

19%

712

3,822

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Ohio

19%

1,353

7,308

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Massachusetts

18%

4,211

22,817

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Florida

18%

1,695

9,326

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Maryland

18%

1,271

7,048

*Criteria: Minimum of 20 samples per state.

Top Emerging* Lineages (Past 12 Weeks)

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Turkey

2021-10-04

33% -> 60% (+27%)

984 / 3,008

1,030 / 1,716

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Austria

2021-11-01

30% -> 45% (+15%)

177 / 584

75 / 166

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Greece

2021-10-18

23% -> 37% (+14%)

73 / 321

53 / 145

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Norway

2021-11-01

22% -> 36% (+14%)

230 / 1,036

130 / 363

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Slovenia

2021-10-18

33% -> 46% (+13%)

699 / 2,119

84 / 184

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Netherlands

2021-11-15

34% -> 46% (+12%)

349 / 1,030

41 / 90

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Kosovo

2021-10-04

20% -> 31% (+11%)

22 / 110

12 / 39

AY.4.2AY.4.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (85%), P681R, R158-, T19R, T95I, Y145H

Delta

Romania

2021-11-01

2% -> 10% (+9%)

7 / 402

10 / 97

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Bosnia and Herzegovina

2021-10-04

2% -> 11% (+8%)

1 / 42

20 / 184

AY.110AY.110 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157- (69%), G142D (83%), P681R, R158-, T19R

Delta

Luxembourg

2021-10-18

4% -> 12% (+8%)

32 / 764

97 / 797

AY.46.6AY.46.6 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (88%), E156G (90%), F157-, P681R, R158-, T19R

Delta

Switzerland

2021-11-15

9% -> 17% (+8%)

430 / 4,533

84 / 482

AY.121AY.121 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (89%), F157- (90%), P681R, R158-, T19R, T95I (76%)

Delta

Germany

2021-11-15

3% -> 11% (+8%)

299 / 9,285

8 / 73

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Ireland

2021-11-15

4% -> 11% (+7%)

10 / 260

9 / 84

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

France

2021-11-15

19% -> 26% (+7%)

933 / 4,980

63 / 247

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Finland

2021-10-04

16% -> 23% (+7%)

146 / 907

63 / 276

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Sweden

2021-11-15

13% -> 19% (+7%)

505 / 4,017

13 / 68

AY.39AY.39 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)

Delta

Czechia

2021-11-01

2% -> 9% (+7%)

29 / 1,436

30 / 352

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Estonia

2021-11-01

8% -> 15% (+6%)

29 / 344

10 / 67

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Denmark

2021-10-04

25% -> 32% (+6%)

1,229 / 4,844

2,392 / 7,592

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Croatia

2021-10-18

32% -> 38% (+6%)

214 / 661

227 / 590

AY.73AY.73 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (79%), D614G, D950N (59%), E156G, F157-, G142D (70%), P681R, R158-, T19R

Delta

Spain

2021-11-15

0% -> 6% (+6%)

3 / 1,190

7 / 117

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Portugal

2021-11-01

13% -> 18% (+5%)

135 / 1,073

138 / 770

AY.4.5AY.4.5 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, D1259Y, E156G, F157-, G142D (61%), P681R, R158-, T19R, T95I (80%)

Delta

Italy

2021-11-01

0% -> 4% (+4%)

2 / 2,073

88 / 2,171

AY.92AY.92 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R (88%), T478K (90%)
Spike (non-RBD)	D178N (51%), D614G, D950N, E156G (79%), F157- (82%), G142D (53%), P681R, R158- (79%), T19R (88%), T95I (66%)

Delta

Poland

2021-11-01

2% -> 4% (+3%)

40 / 2,621

111 / 2,479

AY.39AY.39 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)

Delta

Slovakia

2021-10-18

1% -> 4% (+3%)

17 / 1,660

55 / 1,546

AY.39AY.39 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)

Delta

Lithuania

2021-11-01

1% -> 2% (+2%)

6 / 977

9 / 384

AY.122.1AY.122.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (61%), P681R, R158-, T19R, T95I (56%)

Delta

Bulgaria

2021-10-04

1% -> 2% (+1%)

7 / 879

12 / 544

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Canada

2021-11-15

5% -> 32% (+27%)

112 / 2,449

20 / 63

AY.9.2AY.9.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R

Delta

Sint Maarten

2021-10-04

39% -> 59% (+20%)

59 / 153

20 / 34

AY.20AY.20 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (74%), V1104L

Delta

Mexico

2021-11-01

44% -> 60% (+16%)

662 / 1,512

206 / 345

AY.113AY.113 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (80%), E156G (79%), F157- (78%), P681R, R158- (79%), T19R, T95I (83%)

Delta

Costa Rica

2021-10-18

41% -> 57% (+15%)

60 / 145

73 / 129

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Martinique

2021-10-18

13% -> 26% (+13%)

3 / 23

7 / 27

AY.119AY.119 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R, T95I (82%)

Delta

Puerto Rico

2021-10-04

4% -> 16% (+12%)

7 / 169

13 / 81

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

AY.59AY.59 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (72%), D614G, D950N, E156G (74%), F157- (74%), P681R, R158- (74%), T19R

Delta

Malaysia

2021-11-01

17% -> 51% (+34%)

41 / 241

33 / 65

AY.30AY.30 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (82%), P681R, R158- (82%), T19R

Delta

Cambodia

2021-10-04

29% -> 61% (+32%)

31 / 106

83 / 135

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Japan

2021-10-04

2% -> 30% (+29%)

34 / 2,188

20 / 66

AY.28AY.28 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, A701S (90%), A1078S, D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R

Delta

Sri Lanka

2021-11-15

37% -> 65% (+28%)

26 / 71

13 / 20

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Pakistan

2021-11-01

24% -> 47% (+24%)

9 / 38

18 / 38

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Hong Kong

2021-10-04

12% -> 36% (+24%)

3 / 24

9 / 25

AY.108AY.108 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (90%), F157-, G142D, P681R, R158- (90%), T19R, T95I

Delta

Georgia

2021-10-18

10% -> 32% (+23%)

9 / 94

10 / 31

AY.33AY.33 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (54%), P681R, Q613H (53%), R158-, T19R, T29A, T250I

Delta

Bahrain

2021-10-04

3% -> 22% (+19%)

5 / 186

82 / 372

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Jordan

2021-10-04

4% -> 21% (+17%)

3 / 69

13 / 62

AY.23AY.23 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L

Delta

Singapore

2021-11-15

44% -> 56% (+12%)

234 / 537

122 / 219

AY.4.4AY.4.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (90%), F157-, G142D (60%), L5F (87%), P681R, R158-, S929T, T19R, T95I (80%)

Delta

Bangladesh

2021-10-04

7% -> 16% (+9%)

5 / 76

7 / 44

AY.57AY.57 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (89%), D614G, D950N, E156G, F157-, G142D (89%), P681R, R158-, T19R

Delta

Vietnam

2021-10-04

87% -> 96% (+9%)

53 / 61

47 / 49

AY.120AY.120 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (81%), E156G, F157-, G142D (57%), P681R, R158-, T19R, T95I (86%)

Delta

India

2021-10-18

11% -> 19% (+8%)

78 / 699

87 / 448

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Thailand

2021-10-18

2% -> 10% (+8%)

16 / 929

67 / 702

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Israel

2021-10-04

15% -> 21% (+6%)

108 / 703

296 / 1,381

AY.113AY.113 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (80%), E156G (79%), F157- (78%), P681R, R158- (79%), T19R, T95I (83%)

Delta

Maldives

2021-10-18

6% -> 12% (+5%)

6 / 97

6 / 52

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

AY.39.1AY.39.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (89%), F157- (90%), P681R, R158- (89%), T19R, T95I (58%)

Delta

New Zealand

2021-11-01

26% -> 36% (+10%)

136 / 527

10 / 28

AY.24AY.24 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (57%), P681R, R158-, T19R

Delta

Papua New Guinea

2021-10-04

45% -> 53% (+8%)

65 / 146

29 / 55

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

AY.42AY.42 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (72%)

Delta

Bonaire

2021-10-04

23% -> 49% (+26%)

19 / 84

40 / 82

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Trinidad And Tobago

2021-10-04

31% -> 52% (+21%)

19 / 62

53 / 102

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Ecuador

2021-10-18

57% -> 77% (+21%)

52 / 92

17 / 22

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Colombia

2021-11-01

5% -> 22% (+17%)

7 / 128

20 / 91

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Chile

2021-10-04

11% -> 26% (+15%)

201 / 1,879

351 / 1,351

C.37C.37 (Lambda) Mutations

Protein	Mutations
Spike (RBD)	F490S, L452Q
Spike (non-RBD)	D253N (84%), D614G, G75V, G252- (84%), L249- (83%), P251- (83%), R246- (83%), S247- (83%), T76I, T250- (83%), T859N, Y248- (83%)

Lambda

Argentina

2021-10-04

13% -> 27% (+14%)

23 / 171

48 / 178

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)

Delta

Curacao

2021-10-18

2% -> 11% (+9%)

1 / 53

5 / 47

AY.34.1AY.34.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (75%), E156G, F157-, L1265F (84%), P681R, Q677H, R158-, T19R, T95I (87%)

Delta

Brazil

2021-11-01

6% -> 12% (+6%)

92 / 1,536

61 / 494

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Aruba

2021-10-04

38% -> 43% (+5%)

67 / 177

16 / 37

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Peru

2021-11-01

4% -> 7% (+4%)

23 / 644

6 / 84

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

B.1.1.529B.1.1.529 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A, G339D, G446S, G496S, K417N (90%), N440K, N501Y, Q493R, Q498R, S371L, S373P, S375F, S477N, T478K, Y505H
Spike (non-RBD)	A67V, D614G, D796Y, G142D (84%), H69- (89%), H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (83%), N856K, N969K, P681H, Q954H, T95I, T547K, V70- (89%), V143- (87%), Y144- (85%), Y145- (85%), ins214EPE (84%)

Omicron

South Africa

2021-11-15

28% -> 88% (+60%)

8 / 29

91 / 104

AY.118AY.118 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R, T95I (81%)

Delta

France (Réunion Island)

2021-10-18

2% -> 33% (+32%)

1 / 60

22 / 66

AY.46AY.46 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (87%), T19R

Delta

Botswana

2021-10-18

46% -> 70% (+24%)

41 / 89

30 / 43

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Spain

2021-09-20

4% -> 27% (+24%)

54 / 1,447

12 / 44

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R

Delta

Seychelles

2021-10-18

80% -> 90% (+10%)

44 / 55

19 / 21

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

State

2-Week Period

Change

Previous Support

Current Support

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

South Dakota

2021-11-01

7% -> 33% (+26%)

13 / 174

11 / 33

AY.83AY.83 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R

Delta

North Dakota

2021-11-01

9% -> 33% (+24%)

45 / 528

35 / 106

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Alabama

2021-11-01

14% -> 33% (+19%)

27 / 198

15 / 46

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

New Hampshire

2021-11-01

13% -> 28% (+15%)

72 / 555

151 / 536

AY.119AY.119 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R, T95I (82%)

Delta

Hawaii

2021-10-18

1% -> 16% (+15%)

4 / 396

35 / 223

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Maine

2021-11-01

31% -> 45% (+14%)

162 / 518

120 / 265

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

Texas

2021-11-15

14% -> 27% (+13%)

144 / 1,046

7 / 26

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

Oklahoma

2021-11-01

13% -> 26% (+13%)

22 / 174

17 / 66

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Michigan

2021-11-15

23% -> 36% (+12%)

553 / 2,378

15 / 42

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Alaska

2021-10-04

30% -> 41% (+12%)

117 / 395

232 / 560

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

District of Columbia

2021-11-01

9% -> 21% (+12%)

21 / 228

36 / 173

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R

Delta

Vermont

2021-10-18

17% -> 28% (+11%)

228 / 1,355

332 / 1,181

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Rhode Island

2021-11-01

14% -> 24% (+10%)

76 / 546

124 / 512

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

Arkansas

2021-10-18

26% -> 35% (+10%)

158 / 619

116 / 327

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Mississippi

2021-10-04

9% -> 18% (+10%)

47 / 542

75 / 408

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Colorado

2021-11-15

24% -> 33% (+9%)

271 / 1,149

34 / 103

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Connecticut

2021-10-04

17% -> 25% (+8%)

165 / 983

324 / 1,302

AY.39AY.39 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)

Delta

Arizona

2021-11-01

4% -> 11% (+8%)

103 / 2,716

218 / 1,928

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Louisiana

2021-10-04

8% -> 15% (+7%)

54 / 709

74 / 495

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Georgia

2021-11-01

21% -> 28% (+7%)

212 / 999

98 / 345

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Virginia

2021-11-01

17% -> 23% (+7%)

157 / 941

122 / 522

AY.3AY.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R

Delta

New York

2021-11-15

8% -> 14% (+7%)

158 / 2,074

11 / 77

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

New Jersey

2021-11-15

24% -> 31% (+7%)

303 / 1,255

8 / 26

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R

Delta

Montana

2021-10-04

25% -> 32% (+7%)

179 / 716

228 / 722

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Iowa

2021-11-01

32% -> 39% (+7%)

280 / 862

230 / 590

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Nebraska

2021-10-04

22% -> 29% (+6%)

226 / 1,015

282 / 981

AY.119AY.119 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R, T95I (82%)

Delta

Delaware

2021-10-18

2% -> 9% (+6%)

8 / 320

17 / 194

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Kansas

2021-10-04

32% -> 38% (+6%)

251 / 785

204 / 539

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Massachusetts

2021-11-01

18% -> 24% (+6%)

894 / 5,020

1,342 / 5,690

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

South Carolina

2021-11-01

7% -> 13% (+6%)

31 / 421

20 / 155

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R

Delta

Kentucky

2021-11-01

18% -> 24% (+5%)

133 / 720

97 / 410

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R

Delta

Idaho

2021-11-01

4% -> 8% (+4%)

32 / 802

24 / 295

AY.100AY.100 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (87%), P681R, R158- (87%), T19R, T95I (69%)

Delta

Wyoming

2021-11-01

1% -> 4% (+3%)

7 / 558

8 / 180

AY.100AY.100 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (87%), P681R, R158- (87%), T19R, T95I (69%)

Delta

Oregon

2021-11-01

1% -> 4% (+2%)

13 / 953

18 / 471

AY.26AY.26 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R, V1264L

Delta

Nevada

2021-11-01

1% -> 4% (+2%)

19 / 1,517

35 / 946

AY.107AY.107 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (87%), H1101Y, P681R, R158- (87%), T19R, T95I (73%)

Delta

Utah

2021-10-18

1% -> 3% (+2%)

19 / 1,493

46 / 1,322

AY.119AY.119 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R, T95I (82%)

Delta

Illinois

2021-10-18

1% -> 3% (+2%)

32 / 2,215

67 / 2,043

AY.3.1AY.3.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (53%), P681R, R158-, T19R

Delta

Tennessee

2021-10-04

2% -> 3% (+2%)

33 / 2,182

49 / 1,581

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R

Delta

Florida

2021-11-01

1% -> 2% (+2%)

17 / 1,966

20 / 830

AY.26AY.26 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R, V1264L

Delta

Maryland

2021-11-01

1% -> 3% (+2%)

18 / 1,629

17 / 644

AY.46.4AY.46.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, E661D, F157-, G142D (53%), P681R, R158-, T19R

Delta

New Mexico

2021-10-04

1% -> 2% (+1%)

11 / 1,189

27 / 1,204

AY.47AY.47 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (60%), P681R, R158-, T19R, V289I

Delta

Missouri

2021-11-01

1% -> 2% (+1%)

10 / 960

8 / 340

AY.118AY.118 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R, T95I (81%)

Delta

Washington

2021-10-04

1% -> 2% (+1%)

24 / 2,767

48 / 2,266

*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

Dashboard Timeline

November 27, 2021

01:30PM

WHO Labels Updated

Added Omicron WHO variant

November 18, 2021

04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages

April 16, 2021

08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page

April 16, 2021

08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily

April 05, 2021

03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page

March 23, 2021

06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release

November 13, 2020

04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!

June 15, 2020

12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts

June 04, 2020

08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time

June 02, 2020

12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash

May 26, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b

May 11, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10

April 27, 2020

12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships

April 03, 2020

12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc

April 02, 2020

10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files

March 31, 2020

12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes

January 10, 2020

12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling

Welcome to the Regeneron COVID-19 Dashboard

5,564,629

November 29, 202107:55 AM ET

07:55 AM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

November 29, 2021
07:55 AM ET