Regeneron COVID-19 Dashboard

Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

7,481,449

SARS-CoV-2 (hCoV-19) genomes

January 28, 2022
10:48 AM ET

Last data update

Top Lineages Per Country (Past 12 Weeks)

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Russia

70%

673

963

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Ukraine

57%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Austria

56%

1,409

2,512

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Gibraltar

55%

489

886

AY.4.5AY.4.5 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, D1259Y, E156G, F157-, G142D (69%), P681R, R158-, T19R, T95I (84%)

Delta

Lithuania

53%

2,701

5,101

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Croatia

42%

2,956

7,067

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

United Kingdom

41%

220,322

539,649

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Slovakia

38%

1,344

3,554

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Greece

36%

636

1,777

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Bosnia and Herzegovina

35%

217

619

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Luxembourg

34%

1,758

5,236

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Ireland

33%

2,014

6,139

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Liechtenstein

32%

139

438

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Romania

31%

323

1,030

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Estonia

31%

295

942

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Portugal

31%

1,393

4,466

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Moldova

31%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Spain

30%

4,864

15,995

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Ireland

30%

1,825

6,139

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Slovenia

29%

2,426

8,387

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Netherlands

29%

4,674

16,304

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Italy

27%

4,626

16,955

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Norway

27%

1,657

6,207

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Belgium

26%

3,626

13,817

AY.121AY.121 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (60%), P681R, R158-, T19R, T95I (86%)

Delta

Turkey

26%

2,632

10,034

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Finland

26%

722

2,757

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Malta

26%

104

401

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Denmark

25%

26,308

104,627

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Belgium

25%

3,392

13,817

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

United Kingdom

23%

124,303

539,649

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Turkey

22%

2,255

10,034

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Spain

22%

3,594

15,995

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

France

22%

10,052

45,365

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Luxembourg

22%

1,128

5,236

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Cyprus

21%

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Bosnia and Herzegovina

21%

129

619

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Czechia

20%

1,529

7,604

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Romania

20%

206

1,030

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Czechia

20%

1,498

7,604

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Montenegro

20%

178

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Moldova

19%

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Germany

19%

17,633

92,546

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Switzerland

19%

4,879

25,626

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Malta

19%

401

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Poland

18%

3,196

17,648

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Moldova

18%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Poland

18%

3,113

17,648

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

France

17%

7,833

45,365

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Netherlands

17%

2,804

16,304

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

Norway

17%

1,051

6,207

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

Finland

16%

453

2,757

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Bulgaria

16%

269

1,641

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Sweden

16%

1,951

12,164

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

Denmark

16%

16,758

104,627

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Croatia

16%

1,119

7,067

AY.126AY.126 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), I850L, P681R, R158-, T19R, T95I (82%)

Delta

Turkey

15%

1,533

10,034

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Montenegro

15%

178

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Czechia

15%

1,145

7,604

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Greece

15%

266

1,777

AY.9.2AY.9.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (81%), D614G, D950N, E156G, F157- (88%), G142D (67%), P681R, R158-, T19R

Delta

Bulgaria

15%

245

1,641

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Greece

15%

263

1,777

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Italy

15%

2,488

16,955

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Switzerland

14%

3,694

25,626

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Russia

14%

133

963

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Romania

14%

142

1,030

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Finland

13%

369

2,757

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Norway

13%

826

6,207

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Bulgaria

13%

218

1,641

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Malta

13%

401

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Gibraltar

13%

117

886

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Slovakia

13%

467

3,554

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Germany

13%

12,126

92,546

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Sweden

13%

1,570

12,164

AY.126AY.126 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), I850L, P681R, R158-, T19R, T95I (82%)

Delta

Ukraine

13%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Liechtenstein

13%

438

AY.4.2.3AY.4.2.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (83%), D614G, D950N (89%), E156G, F157-, G142D (56%), P681R, R158-, T19R, T95I (87%), Y145H (80%)

Delta

Moldova

12%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Netherlands

12%

2,022

16,304

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

France

12%

5,516

45,365

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Sweden

12%

1,473

12,164

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Germany

12%

11,204

92,546

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Czechia

12%

920

7,604

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Slovakia

12%

423

3,554

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Belgium

12%

1,643

13,817

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Slovenia

12%

991

8,387

AY.110AY.110 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (87%)

Delta

Bulgaria

12%

192

1,641

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Lithuania

12%

595

5,101

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Austria

12%

290

2,512

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Lithuania

11%

575

5,101

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Slovenia

11%

925

8,387

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Finland

11%

297

2,757

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Sweden

11%

1,306

12,164

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Estonia

11%

100

942

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Switzerland

11%

2,706

25,626

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Poland

11%

1,863

17,648

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Denmark

10%

10,550

104,627

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Poland

10%

1,776

17,648

AY.43.4AY.43.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R

Delta

Liechtenstein

10%

438

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

France

10%

4,537

45,365

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.34.2AY.34.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, Q677H, R158-, T19R, T95I, T859I

Delta

France (Martinique)

82%

AY.34.2AY.34.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, Q677H, R158-, T19R, T95I, T859I

Delta

Martinique

77%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Puerto Rico

67%

861

1,278

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Guatemala

51%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Saint Martin

49%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Sint Maarten

45%

131

293

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Saint Vincent And The Grenadines

41%

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Dominican Republic

34%

145

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Costa Rica

31%

211

673

AY.25.1AY.25.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (78%), P681R, R158-, T19R

Delta

Canada

30%

10,936

37,002

AY.119AY.119 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (67%), P681R, R158-, T19R, T95I (83%)

Delta

British Virgin Islands

29%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Canada

28%

10,430

37,002

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Sint Maarten

28%

293

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Mexico

25%

1,715

6,985

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Mexico

24%

1,700

6,985

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

United States

24%

121,301

502,398

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

British Virgin Islands

23%

AY.119AY.119 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (67%), P681R, R158-, T19R, T95I (83%)

Delta

Dominican Republic

23%

145

AY.5AY.5 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Saint Vincent And The Grenadines

23%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Guatemala

21%

AY.113AY.113 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, T95I (83%)

Delta

Costa Rica

21%

139

673

AY.4AY.4 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (76%), P681R, R158-, T19R, T95I (87%)

Delta

Saint Martin

21%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Puerto Rico

21%

262

1,278

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

United States

20%

100,076

502,398

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

British Virgin Islands

18%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Costa Rica

17%

116

673

AY.20AY.20 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (76%), V1104L

Delta

Mexico

15%

1,063

6,985

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Canada

15%

5,606

37,002

AY.113AY.113 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, T95I (83%)

Delta

Guatemala

15%

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

United States

15%

73,150

502,398

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.24AY.24 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Brunei

87%

278

318

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

Philippines

71%

AY.57AY.57 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R (86%), T478K (87%)
Spike (non-RBD)	A222V (76%), D614G, D950N, E156G (80%), F157- (81%), G142D (66%), P681R, R158- (80%), T19R

Delta

Vietnam

65%

231

357

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Japan

47%

1,352

2,848

AY.69AY.69 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V, D614G, D950N (86%), E156G, F157-, P681R, R158-, T19R

Delta

South Korea

46%

2,720

5,872

AY.85AY.85 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), P681R, R158- (88%), T19R, T95I (79%)

Delta

Thailand

44%

1,501

3,385

AY.131AY.131 (Delta) Mutations

Protein	Mutations
Spike (RBD)	G446V (61%), L452R, N501T (70%), T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (69%)

Delta

Bangladesh

43%

200

462

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

South Korea

42%

2,453

5,872

AY.30AY.30 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (84%), F157- (85%), P681R, R158- (85%), T19R

Delta

Cambodia

37%

219

586

AY.95AY.95 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (62%), L244S (86%), P681R, T19R, T572I

Delta

Maldives

36%

124

346

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Israel

35%

4,478

12,704

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Pakistan

33%

102

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Indonesia

32%

955

2,939

AY.85AY.85 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (88%), F157- (88%), P681R, R158- (88%), T19R, T95I (79%)

Delta

Cambodia

31%

184

586

AY.33AY.33 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, Q613H (52%), R158-, T19R, T29A, T250I

Delta

Iraq

31%

AY.104AY.104 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (82%), P681R, R158-, T19R, T95I (85%), T572I

Delta

Sri Lanka

30%

250

844

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Malaysia

29%

436

1,521

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Indonesia

27%

807

2,939

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (83%), G142D (66%), P681R, R158- (82%), T19R

Delta

Qatar

26%

344

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

Hong Kong

25%

221

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (83%), G142D (66%), P681R, R158- (82%), T19R

Delta

Nepal

25%

208

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Japan

25%

698

2,848

AY.23AY.23 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R, V1264L

Delta

Singapore

24%

625

2,644

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

Nepal

23%

208

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Hong Kong

23%

221

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Georgia

23%

128

568

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Thailand

22%

747

3,385

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Georgia

22%

123

568

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Jordan

21%

104

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Singapore

20%

539

2,644

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Singapore

20%

538

2,644

AY.106AY.106 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (88%), E156G (84%), F157- (84%), P681R, R158- (84%), S255F (61%), T19R, T95I (56%)

Delta

Jordan

20%

104

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

Qatar

20%

344

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Hong Kong

19%

221

AY.121AY.121 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (60%), P681R, R158-, T19R, T95I (86%)

Delta

Georgia

19%

106

568

AY.23AY.23 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R, V1264L

Delta

Malaysia

19%

283

1,521

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Maldives

18%

346

AY.79AY.79 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R

Delta

Malaysia

18%

270

1,521

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Pakistan

18%

102

AY.23.1AY.23.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D, L1234I, P681R, R158-, T19R, V1264L

Delta

Singapore

17%

462

2,644

AY.29AY.29 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R, T95I

Delta

Japan

17%

496

2,848

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

Pakistan

17%

102

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Georgia

17%

568

AY.59AY.59 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (83%), D614G, D950N, E156G (89%), F157- (90%), G142D (63%), P681R, R158- (89%), T19R

Delta

Malaysia

16%

245

1,521

AY.112AY.112 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (81%), E156G (61%), F157- (61%), P681R, R158- (61%), T19R, T95I (79%)

Delta

Maldives

16%

346

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Sri Lanka

16%

133

844

AY.28AY.28 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	A222V (88%), A701S (81%), A1078S (85%), D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R

Delta

Sri Lanka

15%

130

844

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (83%), G142D (66%), P681R, R158- (82%), T19R

Delta

India

15%

1,509

9,918

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Sri Lanka

15%

125

844

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Philippines

15%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

India

15%

1,460

9,918

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (83%), G142D (66%), P681R, R158- (82%), T19R

Delta

Bangladesh

14%

462

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Cambodia

14%

586

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

India

14%

1,382

9,918

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Israel

13%

1,694

12,704

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (83%), G142D (66%), P681R, R158- (82%), T19R

Delta

Iraq

12%

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Iraq

12%

AY.39AY.39 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (67%)

Delta

Nepal

12%

208

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Thailand

12%

406

3,385

ANA

Pakistan

12%

102

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Vietnam

12%

357

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

Qatar

12%

344

AY.112AY.112 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (81%), E156G (61%), F157- (61%), P681R, R158- (61%), T19R, T95I (79%)

Delta

India

11%

1,136

9,918

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

Bangladesh

11%

462

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (83%), G142D (66%), P681R, R158- (82%), T19R

Delta

Sri Lanka

11%

844

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Cambodia

11%

586

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Philippines

11%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

Hong Kong

10%

221

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

India

10%

1,022

9,918

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.39.1.1AY.39.1.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R, T95I

Delta

New Zealand

71%

1,328

1,873

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Australia

47%

7,495

15,832

AY.39.1AY.39.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R, T95I (72%)

Delta

Australia

29%

4,556

15,832

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

New Zealand

13%

247

1,873

AY.39.1.2AY.39.1.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (90%), F157- (90%), P681R, R158- (90%), T19R, T95I (50%)

Delta

Australia

11%

1,814

15,832

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Suriname

79%

AY.25.1AY.25.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (78%), P681R, R158-, T19R

Delta

Trinidad And Tobago

66%

209

315

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

French Guiana

55%

203

366

AY.42.1AY.42.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D, L938F, P681R, R158-, T19R, T95I, T719I

Delta

Bonaire

44%

170

387

AY.99.2AY.99.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (88%), E156G, F157-, P681R, R158-, T19R

Delta

Brazil

35%

2,649

7,616

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, S112L (51%), T19R

Delta

Argentina

34%

914

2,688

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

French Guiana

30%

110

366

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Curacao

29%

170

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Colombia

27%

401

1,473

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Chile

27%

902

3,331

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Bonaire

25%

387

AY.121AY.121 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (60%), P681R, R158-, T19R, T95I (86%)

Delta

Aruba

22%

231

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Argentina

21%

576

2,688

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Ecuador

21%

461

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Ecuador

21%

461

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Brazil

21%

1,564

7,616

AY.43.3AY.43.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (64%), E156G, F157-, G142D (55%), P681R, R158-, T19R

Delta

Chile

20%

662

3,331

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Chile

20%

660

3,331

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Curacao

17%

170

AY.100AY.100 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R, T95I (81%)

Delta

Ecuador

17%

461

AY.39.2AY.39.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, K1073N, P681R, R158-, T19R, T95I (85%)

Delta

Peru

16%

432

2,652

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Aruba

16%

231

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Colombia

16%

232

1,473

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Ecuador

16%

461

AY.25.1AY.25.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (78%), P681R, R158-, T19R

Delta

Colombia

15%

217

1,473

AY.25.1AY.25.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (78%), P681R, R158-, T19R

Delta

Aruba

14%

231

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Peru

14%

372

2,652

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

French Guiana

14%

366

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Curacao

14%

170

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Bonaire

13%

387

AY.39AY.39 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (67%)

Delta

Trinidad And Tobago

12%

315

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Colombia

12%

173

1,473

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Peru

11%

300

2,652

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Suriname

11%

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Malawi

99%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Zimbabwe

98%

204

208

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Seychelles

97%

153

157

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

South Africa

86%

3,373

3,942

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Botswana

72%

880

1,228

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Senegal

66%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Kenya

64%

377

590

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Ghana

54%

AY.124.1AY.124.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (89%), F157-, P681R, R158-, T19R, T95I (83%)

Delta

Mauritius

51%

153

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Gambia

50%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Morocco

46%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Nigeria

41%

213

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

France (Réunion Island)

38%

223

581

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Nigeria

33%

213

AY.46AY.46 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (70%), P681R, R158- (87%), T19R

Delta

Uganda

27%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Gambia

27%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Uganda

22%

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Egypt

21%

244

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Kenya

21%

125

590

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Senegal

21%

AY.33.1AY.33.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, E654K (68%), F157-, H49Y (68%), P681R, Q613H (73%), R158-, T19R, T29A (74%), T250I (73%), T299I (73%)

Delta

France (Réunion Island)

20%

114

581

AY.43AY.43 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R

Delta

Gambia

19%

AY.36AY.36 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (60%), P681R, R158-, T19R, T95I (83%), V1104L

Delta

Nigeria

18%

213

AY.33AY.33 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (59%), P681R, Q613H (52%), R158-, T19R, T29A, T250I

Delta

Morocco

14%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Ghana

14%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Botswana

12%

153

1,228

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Mauritius

12%

153

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Morocco

12%

B.1.617.2B.1.617.2 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (82%), F157- (83%), G142D (66%), P681R, R158- (82%), T19R

Delta

Mauritius

12%

153

B.1B.1 Mutations

Protein	Mutations
Spike (non-RBD)	D614G

Uganda

10%

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

State

Percent

Lineage Count

Total Count

AY.25AY.25 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, S112L (51%), T19R

Delta

Northern Mariana Islands

99%

402

406

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Louisiana

66%

2,598

3,965

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Texas

54%

9,533

17,753

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Georgia

52%

3,802

7,354

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Hawaii

49%

790

1,608

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Florida

43%

5,286

12,306

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Alabama

42%

611

1,443

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Montana

41%

637

1,559

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Maryland

41%

4,494

11,038

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Massachusetts

40%

19,174

47,666

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Delaware

39%

1,227

3,185

AY.44AY.44 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (89%), F157- (89%), G142D (64%), P681R, R158- (89%), T19R

Delta

Alaska

37%

444

1,209

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Vermont

36%

1,874

5,163

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

South Carolina

36%

1,064

2,946

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

New York

36%

12,290

34,442

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Washington

35%

4,951

14,120

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Maine

35%

624

1,804

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Idaho

34%

873

2,533

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

New Jersey

34%

4,811

13,979

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

District of Columbia

33%

858

2,573

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Ohio

33%

2,732

8,386

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Utah

30%

3,473

11,491

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Mississippi

30%

618

2,055

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Oregon

29%

1,490

5,160

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Iowa

29%

858

2,983

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Wyoming

29%

566

1,975

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Wisconsin

28%

2,995

10,675

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Arkansas

28%

673

2,407

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Missouri

28%

1,138

4,137

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Colorado

27%

11,259

41,024

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Tennessee

27%

947

3,456

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Minnesota

27%

6,148

22,704

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Connecticut

27%

2,681

9,927

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Kansas

27%

953

3,540

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

North Dakota

26%

833

3,222

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Illinois

25%

3,160

12,745

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Arizona

25%

4,342

17,545

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

California

25%

19,818

80,825

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

West Virginia

24%

896

3,692

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

South Dakota

23%

255

1,091

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

North Carolina

22%

2,479

11,057

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Michigan

22%

2,317

10,517

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Nevada

22%

1,023

4,662

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Kentucky

21%

559

2,642

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Nebraska

20%

919

4,502

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Rhode Island

20%

605

2,967

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Pennsylvania

20%

1,855

9,405

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Oklahoma

19%

112

586

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Indiana

19%

1,288

6,761

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

New Mexico

19%

986

5,300

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

New Hampshire

18%

444

2,405

AY.103AY.103 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (68%), P681R, R158-, T19R

Delta

Virginia

17%

894

5,125

*Criteria: Minimum of 20 samples per state.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Lithuania

2022-01-10

7% -> 70% (+63%)

36 / 503

33 / 47

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Luxembourg

2021-12-27

21% -> 84% (+62%)

289 / 1,357

957 / 1,145

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

United Kingdom

2021-12-13

0% -> 62% (+62%)

177 / 112,376

66,820 / 107,446

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Romania

2021-12-27

9% -> 70% (+61%)

22 / 253

223 / 318

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Greece

2021-12-13

1% -> 63% (+61%)

12 / 828

204 / 325

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Liechtenstein

2021-12-27

18% -> 69% (+52%)

20 / 113

34 / 49

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Denmark

2021-12-13

0% -> 52% (+52%)

10 / 23,846

5,931 / 11,467

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Ireland

2021-12-13

1% -> 52% (+51%)

6 / 535

1,290 / 2,491

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Malta

2021-12-27

30% -> 78% (+48%)

50 / 167

54 / 69

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Norway

2021-12-13

0% -> 46% (+46%)

5 / 1,925

579 / 1,253

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Spain

2021-12-13

0% -> 45% (+44%)

7 / 3,603

1,981 / 4,445

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Turkey

2021-12-27

9% -> 52% (+43%)

171 / 2,009

1,273 / 2,458

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Portugal

2021-12-27

32% -> 75% (+43%)

289 / 913

759 / 1,013

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Bulgaria

2021-12-27

31% -> 73% (+42%)

31 / 100

87 / 119

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Russia

2021-12-13

1% -> 39% (+38%)

1 / 183

111 / 285

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Czechia

2021-12-27

8% -> 45% (+37%)

112 / 1,353

833 / 1,836

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Gibraltar

2021-12-13

7% -> 44% (+37%)

19 / 260

98 / 221

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Bosnia and Herzegovina

2021-12-27

3% -> 38% (+35%)

4 / 159

51 / 136

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Italy

2021-12-27

27% -> 61% (+34%)

1,207 / 4,505

1,993 / 3,293

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

Austria

2022-01-10

3% -> 36% (+33%)

15 / 452

55 / 152

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Slovenia

2021-12-27

12% -> 44% (+32%)

196 / 1,627

787 / 1,786

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Sweden

2021-12-13

0% -> 32% (+32%)

4 / 4,118

805 / 2,543

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Belgium

2021-12-13

0% -> 29% (+29%)

5 / 3,247

769 / 2,634

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Poland

2021-12-27

3% -> 29% (+26%)

117 / 3,407

1,723 / 5,865

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Germany

2021-12-27

13% -> 38% (+26%)

2,806 / 21,810

7,714 / 20,071

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Netherlands

2021-12-27

9% -> 34% (+25%)

364 / 3,917

1,200 / 3,533

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Finland

2021-12-13

3% -> 27% (+23%)

38 / 1,154

248 / 926

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Switzerland

2021-12-13

0% -> 23% (+23%)

24 / 6,550

1,300 / 5,571

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

France

2021-12-13

0% -> 23% (+23%)

13 / 9,579

2,201 / 9,699

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Slovakia

2021-12-27

8% -> 29% (+20%)

27 / 323

95 / 332

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Croatia

2021-12-27

2% -> 19% (+17%)

53 / 2,982

293 / 1,550

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Montenegro

2021-11-15

19% -> 27% (+8%)

27 / 142

8 / 30

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

Estonia

2021-12-13

1% -> 7% (+6%)

3 / 340

17 / 240

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Puerto Rico

2021-12-13

9% -> 71% (+62%)

7 / 76

445 / 628

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Canada

2021-12-13

0% -> 54% (+53%)

15 / 6,639

7,389 / 13,764

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Sint Maarten

2021-12-27

33% -> 70% (+37%)

30 / 90

98 / 140

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

United States

2021-12-13

0% -> 35% (+35%)

43 / 102,796

45,553 / 129,713

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Costa Rica

2021-12-13

1% -> 32% (+31%)

1 / 140

51 / 161

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Mexico

2021-12-13

0% -> 27% (+27%)

2 / 957

560 / 2,048

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

AY.127AY.127 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N (85%), E156G (84%), F157- (84%), G142D (68%), P681R, R158- (84%), T19R, T95I (80%)

Delta

Hong Kong

2022-01-10

2% -> 65% (+62%)

1 / 44

31 / 48

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

Philippines

2021-12-27

40% -> 95% (+55%)

14 / 35

53 / 56

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

Qatar

2021-12-27

23% -> 72% (+49%)

17 / 74

23 / 32

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Malaysia

2021-12-13

3% -> 50% (+48%)

9 / 348

229 / 454

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Israel

2021-12-13

0% -> 43% (+43%)

10 / 2,419

1,507 / 3,482

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Jordan

2021-12-13

8% -> 50% (+42%)

2 / 26

16 / 32

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Indonesia

2022-01-10

33% -> 73% (+40%)

441 / 1,350

457 / 626

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Japan

2021-12-13

1% -> 40% (+39%)

2 / 289

171 / 430

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

India

2021-12-27

7% -> 43% (+36%)

181 / 2,459

1,046 / 2,406

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Georgia

2021-12-27

11% -> 45% (+34%)

12 / 112

76 / 170

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Singapore

2021-12-13

6% -> 38% (+32%)

24 / 423

261 / 694

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Nepal

2021-12-13

8% -> 37% (+29%)

3 / 38

10 / 27

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Sri Lanka

2021-12-27

8% -> 36% (+28%)

15 / 194

69 / 192

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

South Korea

2021-12-27

3% -> 30% (+27%)

53 / 1,764

281 / 938

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Bangladesh

2021-12-27

8% -> 35% (+27%)

9 / 107

31 / 88

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Thailand

2021-12-27

28% -> 54% (+26%)

327 / 1,164

336 / 622

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Maldives

2021-12-27

23% -> 48% (+25%)

26 / 113

24 / 50

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Cambodia

2021-12-27

8% -> 33% (+25%)

8 / 104

46 / 141

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Pakistan

2021-12-27

35% -> 56% (+20%)

11 / 31

19 / 34

AY.57AY.57 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R (86%), T478K (87%)
Spike (non-RBD)	A222V (76%), D614G, D950N, E156G (80%), F157- (81%), G142D (66%), P681R, R158- (80%), T19R

Delta

Vietnam

2021-11-15

68% -> 81% (+13%)

36 / 53

48 / 59

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Iraq

2021-12-27

8% -> 16% (+8%)

3 / 36

7 / 44

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Australia

2021-12-13

0% -> 60% (+60%)

6 / 2,017

3,520 / 5,867

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

New Zealand

2022-01-10

28% -> 47% (+20%)

140 / 502

55 / 116

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Brazil

2021-12-27

33% -> 82% (+49%)

503 / 1,521

1,008 / 1,222

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Bonaire

2021-12-27

15% -> 59% (+45%)

11 / 75

82 / 138

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Colombia

2021-12-13

2% -> 42% (+40%)

7 / 316

145 / 342

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

French Guiana

2021-12-27

33% -> 73% (+40%)

20 / 61

95 / 131

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Chile

2021-12-13

7% -> 37% (+30%)

33 / 506

571 / 1,555

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Curacao

2021-12-27

38% -> 67% (+29%)

20 / 53

30 / 45

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Argentina

2021-12-13

3% -> 31% (+28%)

20 / 613

273 / 881

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Peru

2021-12-13

0% -> 28% (+28%)

1 / 777

234 / 842

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Ecuador

2021-12-13

3% -> 25% (+21%)

3 / 91

26 / 106

AY.121AY.121 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (60%), P681R, R158-, T19R, T95I (86%)

Delta

Aruba

2021-12-13

12% -> 32% (+21%)

5 / 43

23 / 71

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Trinidad And Tobago

2021-12-27

3% -> 12% (+9%)

2 / 72

5 / 42

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

France (Réunion Island)

2021-12-13

0% -> 83% (+83%)

1 / 283

39 / 47

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Botswana

2021-12-13

22% -> 87% (+66%)

25 / 116

382 / 437

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Nigeria

2021-12-13

5% -> 66% (+60%)

3 / 57

46 / 70

AY.46AY.46 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (87%), F157- (88%), G142D (70%), P681R, R158- (87%), T19R

Delta

Uganda

2021-11-15

4% -> 54% (+50%)

1 / 25

20 / 37

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Senegal

2021-12-27

45% -> 85% (+40%)

9 / 20

17 / 20

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Kenya

2021-12-13

6% -> 33% (+27%)

2 / 33

108 / 329

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Egypt

2021-12-27

12% -> 31% (+19%)

7 / 58

23 / 75

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	D405N, E484A, G339D, K417N, N440K (85%), N501Y, Q493R, Q498R, R408S, S371F, S373P, S375F, S477N, T376A, T478K, Y505H
Spike (non-RBD)	A27S (89%), D614G, D796Y, G142D (90%), H655Y, L24- (89%), N679K, N764K, N969K, P25- (89%), P26- (89%), P681H, Q954H, T19I, V213G

Omicron

South Africa

2022-01-10

17% -> 32% (+15%)

79 / 459

33 / 103

AY.124.1AY.124.1 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G (89%), F157-, P681R, R158-, T19R, T95I (83%)

Delta

Mauritius

2021-12-13

48% -> 61% (+13%)

38 / 79

35 / 57

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Ghana

2021-11-15

4% -> 17% (+13%)

1 / 28

11 / 66

AY.122AY.122 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	D614G, D950N, E156G, F157-, G142D (58%), P681R, R158-, T19R

Delta

Seychelles

2021-11-15

89% -> 99% (+10%)

24 / 27

129 / 130

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

State

2-Week Period

Change

Previous Support

Current Support

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Texas

2021-12-13

0% -> 73% (+73%)

1 / 2,886

5,383 / 7,418

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Hawaii

2021-12-13

1% -> 68% (+67%)

2 / 264

354 / 520

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

New York

2021-12-13

0% -> 55% (+55%)

13 / 5,159

6,191 / 11,307

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Maryland

2021-12-13

0% -> 54% (+54%)

6 / 1,915

2,097 / 3,868

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Vermont

2021-12-27

39% -> 92% (+53%)

120 / 306

1,064 / 1,158

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Massachusetts

2021-12-27

43% -> 90% (+47%)

3,379 / 7,913

12,867 / 14,356

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Pennsylvania

2021-12-27

16% -> 57% (+40%)

308 / 1,905

765 / 1,351

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Minnesota

2021-12-27

12% -> 53% (+40%)

277 / 2,297

1,912 / 3,641

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

New Hampshire

2021-12-27

15% -> 55% (+40%)

50 / 336

278 / 508

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Montana

2021-12-27

25% -> 65% (+39%)

57 / 226

351 / 543

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Wisconsin

2021-12-13

0% -> 39% (+39%)

1 / 2,586

1,253 / 3,183

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

West Virginia

2021-12-27

7% -> 46% (+39%)

71 / 1,006

223 / 483

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Delaware

2021-12-27

24% -> 62% (+38%)

102 / 418

945 / 1,516

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

North Dakota

2021-12-27

13% -> 50% (+38%)

102 / 792

394 / 781

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Florida

2021-12-13

0% -> 37% (+37%)

1 / 1,414

1,712 / 4,576

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Colorado

2021-12-27

36% -> 73% (+37%)

3,399 / 9,533

6,799 / 9,333

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

South Dakota

2021-12-27

9% -> 46% (+37%)

25 / 284

125 / 274

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Arizona

2021-12-27

13% -> 49% (+36%)

416 / 3,198

2,428 / 4,957

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Arkansas

2021-12-27

8% -> 44% (+36%)

25 / 311

495 / 1,130

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Kentucky

2021-12-27

11% -> 47% (+36%)

68 / 598

80 / 170

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

California

2021-12-13

0% -> 35% (+35%)

3 / 14,591

10,140 / 28,795

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Connecticut

2021-12-13

0% -> 35% (+35%)

1 / 1,926

854 / 2,433

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Missouri

2021-12-27

8% -> 42% (+35%)

86 / 1,142

428 / 1,017

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Maine

2021-12-27

8% -> 43% (+35%)

31 / 382

122 / 286

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Nevada

2021-12-27

25% -> 58% (+34%)

263 / 1,073

631 / 1,083

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Kansas

2021-12-27

6% -> 40% (+34%)

41 / 651

296 / 742

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

New Mexico

2021-12-27

7% -> 40% (+33%)

61 / 853

458 / 1,136

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Indiana

2021-12-27

10% -> 43% (+33%)

127 / 1,336

358 / 840

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Oregon

2021-12-27

23% -> 55% (+32%)

184 / 807

1,136 / 2,056

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Wyoming

2021-12-27

14% -> 46% (+32%)

32 / 229

334 / 722

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Washington

2021-12-13

0% -> 32% (+32%)

1 / 2,022

1,148 / 3,551

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Rhode Island

2021-12-27

27% -> 59% (+32%)

158 / 595

383 / 653

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

North Carolina

2021-12-27

15% -> 47% (+32%)

402 / 2,607

1,479 / 3,135

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Alaska

2021-12-27

16% -> 47% (+31%)

22 / 138

120 / 253

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Idaho

2021-12-27

26% -> 58% (+31%)

155 / 591

501 / 871

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Nebraska

2021-12-27

8% -> 39% (+31%)

52 / 689

400 / 1,036

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Iowa

2021-12-27

13% -> 43% (+31%)

74 / 591

246 / 567

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

South Carolina

2021-12-27

26% -> 56% (+30%)

162 / 619

664 / 1,177

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

Oklahoma

2021-12-27

16% -> 46% (+30%)

20 / 124

75 / 163

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Virginia

2021-12-27

15% -> 44% (+29%)

164 / 1,085

340 / 766

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D (90%), G446S (51%), G496S (88%), N440K (50%), N501Y (88%), Q493R (89%), Q498R (88%), S371L (83%), S373P (83%), S375F (83%), S477N (88%), T478K (88%), Y505H (88%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (79%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (79%)

Omicron

New Jersey

2021-12-13

0% -> 28% (+28%)

1 / 2,218

1,201 / 4,227

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Utah

2022-01-10

42% -> 70% (+28%)

1,549 / 3,646

1,450 / 2,061

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Tennessee

2021-12-13

0% -> 27% (+27%)

1 / 689

258 / 965

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Mississippi

2021-12-27

23% -> 48% (+25%)

84 / 367

439 / 910

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Alabama

2021-12-27

34% -> 60% (+25%)

120 / 350

438 / 736

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Louisiana

2022-01-10

14% -> 39% (+25%)

268 / 1,935

76 / 195

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Michigan

2022-01-10

33% -> 58% (+25%)

447 / 1,337

148 / 253

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Ohio

2021-12-27

49% -> 72% (+23%)

1,275 / 2,618

1,052 / 1,468

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

District of Columbia

2021-12-27

30% -> 52% (+23%)

291 / 980

234 / 448

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Illinois

2021-12-27

10% -> 29% (+19%)

355 / 3,611

652 / 2,246

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	E484A (88%), G339D, G446S (61%), G496S (88%), K417N (55%), N440K (60%), N501Y (88%), Q493R (89%), Q498R (87%), R346K, S371L, S373P, S375F, S477N (88%), T478K (88%), Y505H (87%)
Spike (non-RBD)	A67V, D614G, D796Y, G142D, H69-, H655Y, L212I (85%), L981F, N211- (85%), N679K, N764K (85%), N856K, N969K, P681H, Q954H, T95I, T547K, V70-, V143-, Y144-, Y145-, ins214EPE (74%)

Omicron

Georgia

2021-12-27

57% -> 69% (+12%)

1,567 / 2,765

1,677 / 2,435

*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

Dashboard Timeline

January 07, 2022

04:30PM

Top/emerging variant graphs updated

Added overlays and country-specific information to variant graphs

November 27, 2021

01:30PM

WHO Labels Updated

Added Omicron WHO variant

November 18, 2021

04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages

April 16, 2021

08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page

April 16, 2021

08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily

April 05, 2021

03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page

March 23, 2021

06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release

November 13, 2020

04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!

June 15, 2020

12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts

June 04, 2020

08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time

June 02, 2020

12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash

May 26, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b

May 11, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10

April 27, 2020

12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships

April 03, 2020

12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc

April 02, 2020

10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files

March 31, 2020

12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes

January 10, 2020

12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling

Welcome to the Regeneron COVID-19 Dashboard

7,481,449

January 28, 2022
10:48 AM ET

10:48 AM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

Welcome to the Regeneron COVID-19 Dashboard

7,481,449

January 28, 202210:48 AM ET

10:48 AM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

January 28, 2022
10:48 AM ET