Regeneron COVID-19 Dashboard

Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

12,984,667

SARS-CoV-2 (hCoV-19) genomes

October 05, 2022
10:28 PM ET

Last data update

Top Lineages Per Country (Past 12 Weeks)

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Russia

70%

5,997

8,520

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Crimea

65%

100

154

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

45%

2,408

5,296

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

44%

963

2,192

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

42%

930

2,219

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montenegro

35%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bulgaria

34%

100

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

33%

380

1,136

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

32%

1,258

3,957

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

32%

6,149

19,487

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

31%

740

2,352

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

29%

294

1,005

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

29%

2,225

7,664

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

29%

176

609

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

29%

1,743

6,060

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

27%

703

2,582

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

27%

531

1,990

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

26%

751

2,901

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

26%

745

2,901

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

25%

943

3,730

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

25%

153

609

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

25%

931

3,730

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

25%

283

1,142

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

25%

2,029

8,199

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

25%

814

3,297

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iceland

25%

213

869

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

24%

2,512

10,353

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

24%

9,237

38,233

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

24%

2,494

10,353

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

24%

269

1,136

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ukraine

24%

127

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iceland

24%

205

869

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

23%

236

1,005

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

23%

235

1,005

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

23%

838

3,584

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

23%

600

2,582

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

23%

849

3,658

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

23%

460

1,990

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

23%

263

1,142

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

23%

6,923

30,271

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

23%

500

2,192

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

23%

532

2,352

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

22%

8,093

36,045

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

22%

6,764

30,271

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

22%

815

3,658

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montenegro

22%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

22%

787

3,584

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

22%

8,313

38,233

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

22%

7,755

36,045

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Crimea

21%

154

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

21%

4,155

19,487

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ukraine

21%

127

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iceland

21%

181

869

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

20%

761

3,769

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

19%

1,172

6,060

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

19%

217

1,142

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bulgaria

19%

100

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Liechtenstein

19%

175

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

19%

618

3,297

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

19%

1,434

7,664

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

18%

729

3,957

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Liechtenstein

18%

175

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

18%

1,496

8,199

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

18%

399

2,219

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

18%

645

3,658

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

17%

1,794

10,353

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ukraine

17%

127

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

17%

344

1,990

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

17%

105

609

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

17%

5,170

30,271

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

16%

993

6,060

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

16%

184

1,136

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

16%

579

3,584

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

16%

599

3,769

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

16%

1,297

8,199

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

16%

587

3,730

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

16%

516

3,297

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

16%

618

3,957

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

15%

364

2,352

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

15%

5,533

36,045

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

15%

5,633

38,233

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

15%

380

2,582

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montenegro

15%

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

14%

1,164

8,199

BF.14BF.14 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, N450D, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

14%

535

3,769

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

14%

2,737

19,487

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

13%

389

2,901

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

13%

687

5,296

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

13%

966

7,664

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

13%

665

5,296

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

12%

4,757

38,233

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

12%

273

2,219

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Liechtenstein

12%

175

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

11%

252

2,192

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Slovakia

11%

370

3,297

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

10%

302

2,901

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Bulgaria

10%

100

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bulgaria

10%

100

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Dominican Republic

76%

250

329

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Panama

73%

151

207

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

29%

1,352

4,606

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

29%

343

1,187

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

26%

6,447

24,805

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United States

26%

55,531

215,393

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

24%

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

22%

184

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

22%

112

516

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

22%

BA.5.2.2BA.5.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

20%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

19%

4,729

24,805

BA.4.4BA.4.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

18%

212

1,187

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

18%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

17%

184

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

16%

744

4,606

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United States

15%

32,599

215,393

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

15%

3,708

24,805

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

14%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

14%

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

14%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

14%

516

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

13%

606

4,606

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S (57%), N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

12%

184

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

12%

147

1,187

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United States

12%

26,117

215,393

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

11%

184

BA.5.1.6BA.5.1.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

11%

524

4,606

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

11%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

11%

BE.1.2BE.1.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

10%

120

1,187

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

10%

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mongolia

78%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

78%

3,610

4,636

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iran

77%

127

166

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

73%

261

358

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

70%

369

526

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

69%

1,285

1,857

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

68%

838

1,229

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

59%

165

278

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

52%

5,291

10,111

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

49%

317

643

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

46%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

41%

158

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

41%

138

336

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brunei

39%

339

865

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brunei

39%

337

865

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

39%

15,607

40,414

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

37%

1,225

3,304

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

35%

2,335

6,761

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sri Lanka

33%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sri Lanka

28%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

27%

2,736

10,111

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bangladesh

26%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

24%

3,408

14,122

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

24%

9,721

40,414

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

23%

146

643

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Israel

22%

3,074

14,122

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

18%

336

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Japan

18%

7,278

40,414

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sri Lanka

17%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

17%

158

BF.15BF.15 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D (89%), V213G, Y248H, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sri Lanka

16%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

16%

2,270

14,122

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

15%

158

BJ.1BJ.1 Mutations

Protein	Mutations
Spike (RBD)	G339H, R346T, L368I (60%), S371F (56%), D405N (72%), R408S (59%), K417N (51%), N440K (76%), V445P (71%), G446S (73%), S477N (87%), T478K (86%), V483A (85%), E484A (86%), F490V (86%), Q493R (86%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, V83A, G142D, Y144-, H146Q, Q183E, V213E, D614G, H655Y, N679K, P681H, N764K, D796Y, G798D, Q954H, N969K, S1003I

Bangladesh

14%

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bangladesh

14%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

14%

336

BA.2.76BA.2.76 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (67%), S477N (79%), T478K (79%), E484A (78%), Q493R (75%), Q498R (75%), N501Y (77%), Y505H (78%)
Spike (non-RBD)	T19I, L24- (69%), P25- (70%), P26- (70%), A27S (71%), G142D, V213G, Y248N, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

14%

BA.2.38.1BA.2.38.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F (73%), S373P (71%), S375F (69%), T376A (68%), D405N (81%), R408S (72%), K417T (55%), N440K (55%), K444N (57%), S477N (61%), T478K (61%), E484A (60%), Q493R (55%), Q498R (58%), N501Y (62%), Y505H (60%)
Spike (non-RBD)	T19I, L24- (65%), P25- (65%), P26- (65%), A27S (68%), G142D, V213G, S247N, Y248S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

14%

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Brunei

14%

121

865

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

14%

454

3,304

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

14%

1,913

14,122

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

13%

336

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iran

13%

166

BA.5.3.1BA.5.3.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bangladesh

13%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

13%

866

6,761

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Georgia

13%

158

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mongolia

12%

BA.2.75.1BA.2.75.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H (85%), S371F (80%), S373P (80%), S375F (79%), T376A (79%), D405N (84%), R408S (77%), K417N (76%), N440K (82%), G446S (83%), N460K (86%), S477N (86%), T478K (86%), E484A (86%), Q498R (80%), N501Y (81%), Y505H (80%)
Spike (non-RBD)	T19I, L24- (81%), P25- (81%), P26- (81%), A27S (83%), G142D (63%), K147E (73%), W152R (75%), F157L (76%), I210V (78%), V213G (78%), G257S (86%), D574V, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

12%

830

6,761

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

12%

380

3,304

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

10%

526

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kiribati

76%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Northern Mariana Islands

65%

151

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

30%

4,340

14,275

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

27%

3,864

14,275

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

26%

702

2,651

BA.1.17.2BA.1.17.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371L (88%), S373P (89%), S375F (89%), K417N (58%), N440K (58%), G446S (59%), S477N, T478K, E484A, Q493R, G496S (87%), Q498R (86%), N501Y (87%), Y505H (87%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (90%), L212I (90%), ins214EPE (84%), T547K, D614G, H655Y, N679K, P681H, A701V, N764K (84%), D796Y, N856K, Q954H, N969K, L981F

Omicron

Kiribati

24%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

24%

626

2,651

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

15%

403

2,651

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Northern Mariana Islands

14%

151

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Northern Mariana Islands

11%

151

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

52%

1,120

2,145

BA.5.2.2BA.5.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

48%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

43%

115

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

35%

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

31%

193

617

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

30%

294

968

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (86%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

29%

877

2,975

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (86%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

29%

292

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

29%

145

502

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

27%

767

2,887

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

25%

115

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

24%

700

2,975

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

23%

182

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

22%

482

2,145

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

19%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

17%

502

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

16%

292

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

16%

156

968

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

16%

182

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

16%

617

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

15%

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

14%

402

2,887

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

13%

617

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

12%

360

2,975

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

12%

292

BF.10BF.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

11%

617

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

11%

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

11%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

11%

182

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

11%

310

2,887

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

10%

292

BA.4.1BA.4.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N, N440K (86%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G, T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

10%

502

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nigeria

87%

111

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Gambia

72%

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

37%

265

715

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

19%

394

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

18%

132

715

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

18%

519

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

17%

519

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

17%

519

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (87%), K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

13%

519

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

12%

394

BA.5.3.1BA.5.3.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

11%

394

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

11%

715

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

State

Percent

Lineage Count

Total Count

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Idaho

36%

211

582

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nevada

36%

613

1,719

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Mexico

34%

321

935

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Dakota

33%

111

341

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oklahoma

32%

250

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oregon

31%

492

1,572

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nebraska

31%

497

1,623

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alaska

31%

176

575

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

California

30%

12,227

40,355

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Washington

30%

2,196

7,280

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Utah

30%

1,700

5,749

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wisconsin

28%

699

2,459

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montana

28%

149

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colorado

28%

1,537

5,478

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hawaii

28%

496

1,775

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arizona

28%

1,094

3,971

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Louisiana

27%

682

2,505

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iowa

27%

412

1,516

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ohio

27%

979

3,618

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Minnesota

26%

888

3,361

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Hampshire

26%

117

447

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Connecticut

26%

942

3,601

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

26%

371

1,421

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Maryland

26%

1,172

4,586

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Carolina

25%

369

1,468

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kansas

25%

355

1,432

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Carolina

25%

2,372

9,592

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Jersey

25%

1,992

8,081

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Delaware

24%

317

1,299

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New York

24%

4,752

19,511

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

District of Columbia

24%

345

1,422

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Dakota

24%

323

1,334

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Virginia

24%

1,785

7,386

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wyoming

24%

392

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Rhode Island

24%

376

1,580

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Illinois

24%

1,989

8,440

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pennsylvania

23%

1,359

5,857

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mississippi

23%

197

857

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Missouri

23%

341

1,487

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arkansas

23%

199

871

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

West Virginia

23%

249

1,097

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Texas

22%

4,254

19,130

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Michigan

22%

1,341

6,070

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Maine

22%

200

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Florida

21%

1,729

8,225

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Massachusetts

21%

955

4,545

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Tennessee

21%

146

695

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indiana

20%

614

3,142

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

19%

827

4,393

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vermont

18%

143

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alabama

15%

128

848

*Criteria: Minimum of 20 samples per state.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bulgaria

2022-08-08

28% -> 54% (+27%)

21 / 76

13 / 24

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

2022-09-19

13% -> 30% (+16%)

25 / 188

8 / 27

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iceland

2022-08-22

21% -> 35% (+14%)

35 / 166

52 / 147

BF.5BF.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N (90%), N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S

Omicron

Slovakia

2022-09-19

7% -> 21% (+14%)

24 / 343

15 / 72

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

2022-08-22

20% -> 33% (+13%)

60 / 305

53 / 162

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Liechtenstein

2022-09-05

11% -> 24% (+13%)

5 / 45

11 / 46

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

2022-08-22

23% -> 35% (+11%)

65 / 278

82 / 236

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

2022-08-22

44% -> 55% (+11%)

301 / 689

167 / 306

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

2022-09-19

20% -> 30% (+10%)

115 / 562

38 / 125

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

2022-08-22

18% -> 27% (+9%)

71 / 392

29 / 107

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

2022-08-08

14% -> 23% (+9%)

164 / 1,172

271 / 1,190

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

2022-09-19

7% -> 14% (+7%)

56 / 837

52 / 376

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

2022-09-05

2% -> 9% (+7%)

16 / 766

30 / 328

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

2022-09-05

5% -> 12% (+7%)

14 / 257

6 / 48

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

2022-08-22

21% -> 28% (+6%)

140 / 655

109 / 392

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

2022-09-05

13% -> 20% (+6%)

56 / 423

68 / 348

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ukraine

2022-08-08

20% -> 26% (+6%)

12 / 59

18 / 68

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

2022-09-19

5% -> 11% (+5%)

444 / 8,737

48 / 455

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

2022-09-19

6% -> 11% (+5%)

316 / 5,212

255 / 2,277

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

2022-09-19

18% -> 23% (+5%)

266 / 1,445

170 / 725

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

2022-09-19

1% -> 6% (+5%)

17 / 1,511

10 / 170

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

2022-09-05

4% -> 8% (+4%)

209 / 5,672

565 / 6,935

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

2022-09-19

3% -> 7% (+4%)

13 / 479

14 / 215

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

2022-09-05

1% -> 5% (+3%)

10 / 820

57 / 1,226

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

2022-08-08

1% -> 3% (+2%)

5 / 783

21 / 689

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

2022-08-08

0% -> 3% (+2%)

6 / 1,355

35 / 1,266

BA.5.1.5BA.5.1.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, P1263Q

Omicron

Switzerland

2022-09-05

0% -> 2% (+2%)

3 / 880

20 / 831

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

2022-08-08

1% -> 3% (+2%)

22 / 2,874

73 / 2,775

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Russia

2022-09-05

1% -> 2% (+2%)

15 / 2,035

7 / 284

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

U.S. Virgin Islands

2022-08-08

5% -> 29% (+23%)

3 / 59

6 / 21

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

2022-08-08

6% -> 16% (+10%)

5 / 85

16 / 99

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

2022-09-19

17% -> 27% (+10%)

34 / 195

30 / 110

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Dominican Republic

2022-09-05

76% -> 85% (+10%)

62 / 82

69 / 81

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

2022-09-05

20% -> 29% (+9%)

165 / 828

57 / 197

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

2022-08-08

20% -> 28% (+8%)

64 / 317

43 / 155

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (80%), S477N (88%), T478K (88%), E484A (88%), Q493R (83%), Q498R (85%), N501Y (86%), Y505H (87%)
Spike (non-RBD)	T19I, L24- (87%), P25- (87%), P26- (87%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

2022-09-19

4% -> 48% (+44%)

23 / 517

14 / 29

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bangladesh

2022-09-05

5% -> 28% (+23%)

1 / 20

9 / 32

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

2022-09-05

6% -> 28% (+22%)

40 / 674

192 / 694

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brunei

2022-08-22

31% -> 50% (+19%)

94 / 305

76 / 153

BA.5.2.6BA.5.2.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

2022-09-19

8% -> 26% (+18%)

50 / 618

11 / 42

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

2022-08-08

33% -> 51% (+18%)

24 / 72

28 / 55

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

2022-08-08

44% -> 57% (+13%)

163 / 367

106 / 185

BA.5.2.7BA.5.2.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444M, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

2022-08-22

3% -> 14% (+11%)

3 / 116

15 / 109

BA.5.2.6BA.5.2.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

2022-09-05

5% -> 15% (+10%)

3 / 61

6 / 40

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

2022-09-19

41% -> 50% (+9%)

50 / 121

13 / 26

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mongolia

2022-08-08

70% -> 79% (+8%)

19 / 27

37 / 47

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

2022-08-08

67% -> 75% (+8%)

202 / 300

136 / 181

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

2022-08-08

48% -> 55% (+7%)

1,157 / 2,422

1,719 / 3,132

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

2022-09-05

2% -> 9% (+7%)

4 / 222

6 / 70

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

2022-08-08

19% -> 25% (+6%)

1,340 / 7,031

741 / 2,984

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

2022-08-08

2% -> 6% (+4%)

20 / 963

38 / 601

BA.5.2.6BA.5.2.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

2022-09-19

0% -> 3% (+3%)

9 / 4,154

5 / 172

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Northern Mariana Islands

2022-08-08

8% -> 21% (+13%)

9 / 113

8 / 38

BA.2.75BA.2.75 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339H, S371F, S373P, S375F, T376A, D405N, R408S (86%), K417N (84%), N440K (87%), G446S (89%), N460K (89%), S477N, T478K, E484A, Q498R (89%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	T19I, L24- (77%), P25- (77%), P26- (77%), A27S (80%), G142D (73%), K147E (85%), W152R (85%), F157L (86%), I210V (87%), V213G (87%), G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

2022-09-05

2% -> 5% (+3%)

68 / 3,152

129 / 2,494

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Aruba

2022-08-22

16% -> 38% (+22%)

15 / 95

12 / 32

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

2022-08-08

15% -> 35% (+20%)

4 / 26

18 / 51

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

2022-08-22

34% -> 53% (+19%)

62 / 181

16 / 30

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

2022-09-05

12% -> 29% (+17%)

111 / 917

17 / 59

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

2022-09-05

12% -> 26% (+14%)

15 / 126

17 / 65

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

2022-08-08

11% -> 21% (+10%)

4 / 36

5 / 24

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

2022-08-08

9% -> 17% (+7%)

21 / 227

9 / 54

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ecuador

2022-08-22

18% -> 25% (+7%)

70 / 388

19 / 77

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

2022-09-05

25% -> 31% (+6%)

192 / 770

133 / 433

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.5.3BA.5.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (83%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

2022-08-22

2% -> 13% (+11%)

3 / 130

12 / 93

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

2022-08-08

13% -> 23% (+10%)

42 / 315

39 / 168

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nigeria

2022-08-22

81% -> 89% (+8%)

25 / 31

40 / 45

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

2022-09-05

10% -> 16% (+6%)

33 / 327

13 / 81

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

State

2-Week Period

Change

Previous Support

Current Support

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vermont

2022-09-05

5% -> 40% (+35%)

2 / 41

8 / 20

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Maine

2022-08-08

9% -> 32% (+23%)

5 / 54

13 / 40

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Washington

2022-09-19

29% -> 45% (+16%)

184 / 630

18 / 40

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iowa

2022-08-08

21% -> 36% (+15%)

100 / 474

143 / 400

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

2022-09-19

10% -> 24% (+13%)

20 / 197

8 / 34

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Idaho

2022-09-05

15% -> 26% (+12%)

22 / 151

18 / 69

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Hampshire

2022-08-08

18% -> 29% (+11%)

16 / 89

34 / 116

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montana

2022-08-08

13% -> 24% (+11%)

9 / 71

6 / 25

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kansas

2022-09-19

10% -> 20% (+11%)

22 / 230

11 / 54

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Dakota

2022-08-08

23% -> 33% (+11%)

21 / 93

19 / 57

BA.5.2.3BA.5.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Dakota

2022-09-19

1% -> 12% (+11%)

2 / 160

10 / 84

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wyoming

2022-08-22

9% -> 20% (+11%)

12 / 127

9 / 45

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oregon

2022-09-05

28% -> 39% (+11%)

66 / 234

84 / 217

BA.5.5BA.5.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Rhode Island

2022-09-19

1% -> 11% (+10%)

4 / 338

6 / 55

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arkansas

2022-09-19

18% -> 27% (+9%)

20 / 110

6 / 22

BA.5.6BA.5.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Missouri

2022-09-19

3% -> 12% (+9%)

12 / 352

7 / 58

BF.10BF.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Louisiana

2022-09-19

5% -> 13% (+8%)

12 / 260

9 / 69

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wisconsin

2022-08-22

12% -> 20% (+8%)

84 / 701

93 / 458

BE.1BE.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mississippi

2022-08-22

1% -> 9% (+8%)

3 / 285

18 / 192

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oklahoma

2022-08-22

2% -> 10% (+8%)

1 / 47

5 / 48

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

West Virginia

2022-08-08

6% -> 14% (+8%)

16 / 285

38 / 279

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indiana

2022-09-19

21% -> 29% (+8%)

84 / 406

12 / 42

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nebraska

2022-08-22

11% -> 18% (+8%)

44 / 416

76 / 412

BA.5.1BA.5.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Carolina

2022-08-22

7% -> 13% (+7%)

21 / 320

68 / 510

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Tennessee

2022-09-05

11% -> 18% (+7%)

22 / 202

23 / 131

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Virginia

2022-09-19

16% -> 22% (+6%)

159 / 1,006

17 / 77

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

District of Columbia

2022-09-05

25% -> 32% (+6%)

78 / 306

46 / 145

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Connecticut

2022-09-05

9% -> 15% (+6%)

77 / 861

126 / 833

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Florida

2022-09-19

19% -> 25% (+6%)

291 / 1,523

30 / 119

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Delaware

2022-08-22

6% -> 12% (+6%)

21 / 326

30 / 242

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Minnesota

2022-08-08

10% -> 16% (+6%)

83 / 806

162 / 998

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pennsylvania

2022-09-19

20% -> 26% (+6%)

289 / 1,429

38 / 146

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alaska

2022-09-05

27% -> 32% (+6%)

20 / 75

10 / 31

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Mexico

2022-09-05

2% -> 8% (+6%)

3 / 136

7 / 90

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alabama

2022-09-05

9% -> 14% (+6%)

24 / 278

16 / 113

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Texas

2022-09-19

18% -> 24% (+6%)

594 / 3,282

38 / 161

BA.5.2.1BA.5.2.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Utah

2022-09-05

28% -> 34% (+5%)

274 / 964

151 / 447

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colorado

2022-08-08

12% -> 17% (+5%)

303 / 2,553

278 / 1,622

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arizona

2022-08-08

11% -> 16% (+5%)

159 / 1,470

174 / 1,086

BA.5.2BA.5.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ohio

2022-09-19

18% -> 23% (+5%)

139 / 770

16 / 69

BA.4.6BA.4.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hawaii

2022-09-05

3% -> 6% (+4%)

13 / 447

10 / 155

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Carolina

2022-09-05

0% -> 4% (+3%)

1 / 2,267

76 / 2,163

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New York

2022-09-19

2% -> 5% (+3%)

79 / 3,841

30 / 546

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Illinois

2022-09-19

1% -> 4% (+3%)

23 / 1,650

8 / 193

BF.4BF.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, T259A, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Jersey

2022-09-19

0% -> 2% (+2%)

4 / 2,102

8 / 320

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Michigan

2022-08-22

2% -> 4% (+2%)

24 / 1,497

60 / 1,668

BA.5.2.6BA.5.2.6 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Massachusetts

2022-09-05

0% -> 2% (+2%)

3 / 1,173

19 / 921

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Maryland

2022-09-05

2% -> 3% (+2%)

17 / 1,020

28 / 813

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nevada

2022-08-22

1% -> 3% (+2%)

7 / 468

12 / 387

BF.7BF.7 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

California

2022-09-19

1% -> 2% (+2%)

42 / 5,085

16 / 659

BE.1.1BE.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (87%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

2022-08-08

1% -> 2% (+1%)

11 / 1,105

28 / 1,261

*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

Dashboard Timeline

August 02, 2022

07:00PM

Cache loading updated

Modified cache loading logic to avoid incomplete loading of cache

July 26, 2022

08:00PM

QC pipeline updated

Began filtering out genomes <= 25kb in length and >30% undetermined bases, and began re-calling undetermined lineages

January 07, 2022

04:30PM

Top/emerging variant graphs updated

Added overlays and country-specific information to variant graphs

November 27, 2021

01:30PM

WHO Labels Updated

Added Omicron WHO variant

November 18, 2021

04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages

April 16, 2021

08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page

April 16, 2021

08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily

April 05, 2021

03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page

March 23, 2021

06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release

November 13, 2020

04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!

June 15, 2020

12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts

June 04, 2020

08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time

June 02, 2020

12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash

May 26, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b

May 11, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10

April 27, 2020

12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships

April 03, 2020

12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc

April 02, 2020

10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files

March 31, 2020

12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes

January 10, 2020

12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling

Welcome to the Regeneron COVID-19 Dashboard

12,984,667

October 05, 2022
10:28 PM ET

10:28 PM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Cache loading updated

QC pipeline updated

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

Welcome to the Regeneron COVID-19 Dashboard

12,984,667

October 05, 202210:28 PM ET

10:28 PM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Cache loading updated

QC pipeline updated

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

October 05, 2022
10:28 PM ET