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Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

5,564,629

SARS-CoV-2 (hCoV-19) genomes


November 29, 2021

07:55 AM ET

Last data update


Top Lineages Per Country (Past 12 Weeks)

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Top* Lineages (Past 12 Weeks)

Lineage WHO Label Country Percent Lineage Count Total Count
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Russia 88% 1,038 1,174
AY.4.5AY.4.5 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, D1259Y, E156G, F157-, G142D (61%), P681R, R158-, T19R, T95I (80%)
Delta Lithuania 68% 2,064 3,022
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Bosnia and Herzegovina 63% 201 319
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta United Kingdom 62% 217,833 351,335
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Ireland 60% 3,350 5,578
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Finland 50% 664 1,316
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Estonia 48% 515 1,078
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Ukraine 43% 35 82
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Belgium 42% 4,659 11,201
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Spain 40% 2,192 5,437
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Slovenia 35% 1,533 4,339
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Croatia 35% 879 2,504
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Luxembourg 35% 1,048 3,022
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta France 32% 7,323 23,038
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Turkey 32% 2,339 7,367
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Denmark 31% 15,347 49,646
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Greece 31% 242 793
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Romania 30% 703 2,313
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Slovakia 30% 1,401 4,678
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Czechia 29% 1,338 4,603
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Netherlands 29% 2,385 8,266
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Bulgaria 28% 394 1,429
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Italy 26% 2,536 9,726
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Romania 26% 595 2,313
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Poland 24% 2,207 9,138
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Sweden 24% 3,547 14,771
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Switzerland 23% 4,003 17,073
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Liechtenstein 23% 16 71
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Austria 22% 410 1,829
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Greece 22% 173 793
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Kosovo 22% 36 166
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Austria 22% 396 1,829
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Germany 21% 10,889 51,524
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Czechia 20% 932 4,603
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Norway 20% 861 4,256
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta France 20% 4,593 23,038
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Denmark 19% 9,422 49,646
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Finland 19% 247 1,316
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Germany 18% 9,484 51,524
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Croatia 18% 456 2,504
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Kosovo 18% 30 166
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Netherlands 17% 1,409 8,266
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Norway 17% 723 4,256
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Liechtenstein 17% 12 71
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Poland 17% 1,529 9,138
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Croatia 17% 416 2,504
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Czechia 16% 751 4,603
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Slovakia 16% 758 4,678
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Italy 16% 1,561 9,726
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Norway 15% 652 4,256
AY.121AY.121 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (85%), E156G (89%), F157- (90%), P681R, R158-, T19R, T95I (76%)
Delta Turkey 15% 1,125 7,367
AY.9.2AY.9.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R
Delta Bulgaria 15% 216 1,429
AY.46.6AY.46.6 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (88%), E156G (90%), F157-, P681R, R158-, T19R
Delta Kosovo 15% 25 166
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Switzerland 15% 2,491 17,073
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Denmark 14% 7,179 49,646
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Kosovo 14% 24 166
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Sweden 14% 2,110 14,771
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Austria 14% 261 1,829
AY.102AY.102 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I
Delta Portugal 14% 533 3,770
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Portugal 14% 531 3,770
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Portugal 14% 525 3,770
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Italy 14% 1,334 9,726
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Slovakia 13% 629 4,678
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Switzerland 13% 2,234 17,073
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Lithuania 13% 386 3,022
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Liechtenstein 13% 9 71
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Slovenia 13% 550 4,339
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Poland 13% 1,158 9,138
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Bosnia and Herzegovina 12% 39 319
AY.46.6AY.46.6 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (88%), E156G (90%), F157-, P681R, R158-, T19R
Delta Austria 12% 218 1,829
AY.4.4AY.4.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (90%), F157-, G142D (60%), L5F (87%), P681R, R158-, S929T, T19R, T95I (80%)
Delta Bulgaria 12% 168 1,429
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Bulgaria 12% 166 1,429
AY.5AY.5 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Portugal 12% 437 3,770
AY.4.2AY.4.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D (85%), P681R, R158-, T19R, T95I, Y145H
Delta United Kingdom 11% 39,726 351,335
AY.42AY.42 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (72%)
Delta Liechtenstein 11% 8 71
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Poland 11% 994 9,138
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Turkey 11% 792 7,367
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Greece 10% 82 793
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Denmark 10% 5,090 49,646
AY.46AY.46 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (87%), T19R
Delta Turkey 10% 755 7,367
AY.98.1AY.98.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (74%), P681R, R158-, T19R
Delta Kosovo 10% 17 166
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
AY.34AY.34 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157-, P681R, Q677H (89%), R158- (89%), T19R, T95I (82%)
Delta Martinique 80% 57 71
AY.34AY.34 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157-, P681R, Q677H (89%), R158- (89%), T19R, T95I (82%)
Delta France (Martinique) 71% 65 91
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Canada 57% 13,945 24,534
AY.113AY.113 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (80%), E156G (79%), F157- (78%), P681R, R158- (79%), T19R, T95I (83%)
Delta Costa Rica 49% 171 349
AY.20AY.20 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (74%), V1104L
Delta Mexico 48% 2,947 6,179
AY.9.2AY.9.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R
Delta Sint Maarten 47% 107 226
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Puerto Rico 23% 68 299
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Sint Maarten 23% 51 226
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta United States 22% 74,978 345,124
AY.27AY.27 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D, P681R, Q613H (76%), R158-, T19R
Delta Canada 22% 5,306 24,534
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Sint Maarten 21% 48 226
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta Puerto Rico 20% 59 299
AY.26AY.26 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R, V1264L
Delta Mexico 17% 1,058 6,179
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta United States 16% 54,604 345,124
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta France (Martinique) 15% 14 91
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta United States 15% 50,285 345,124
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Martinique 14% 10 71
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Puerto Rico 14% 41 299
AY.100AY.100 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (86%), F157- (87%), P681R, R158- (87%), T19R, T95I (69%)
Delta Mexico 13% 781 6,179
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta United States 11% 39,142 345,124
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
AY.57AY.57 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V (89%), D614G, D950N, E156G, F157-, G142D (89%), P681R, R158-, T19R
Delta Vietnam 93% 128 138
AY.29AY.29 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R, T95I
Delta Japan 82% 1,907 2,335
AY.69AY.69 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N (84%), E156G, F157-, P681R, R158-, T19R
Delta South Korea 77% 2,387 3,120
AY.23AY.23 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L
Delta Indonesia 74% 239 323
AY.95AY.95 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (64%), E156G (52%), F157- (53%), L244S (83%), P681R, R158- (52%), T19R, T572I (87%)
Delta Maldives 73% 253 345
AY.85AY.85 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (78%)
Delta Thailand 64% 1,655 2,591
AY.23.1AY.23.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D, L1234I (77%), P681R, R158-, T19R, V1264L
Delta Singapore 63% 1,548 2,475
AY.30AY.30 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (82%), F157- (82%), P681R, R158- (82%), T19R
Delta Cambodia 59% 337 575
AY.23AY.23 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L
Delta Malaysia 53% 621 1,169
AY.106AY.106 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (86%), E156G (83%), F157- (83%), P681R, R158- (83%), S255F (62%), T19R, T95I (59%)
Delta Jordan 47% 112 240
AY.28AY.28 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, A701S (90%), A1078S, D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R
Delta Sri Lanka 41% 178 438
AY.23AY.23 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L
Delta Singapore 35% 867 2,475
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta India 33% 948 2,832
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Georgia 33% 88 266
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Hong Kong 31% 28 89
AY.104AY.104 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R, T95I (87%), T572I (71%)
Delta Sri Lanka 31% 137 438
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Bangladesh 31% 38 122
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Pakistan 30% 43 141
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Georgia 27% 71 266
AY.59AY.59 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V (72%), D614G, D950N, E156G (74%), F157- (74%), P681R, R158- (74%), T19R
Delta Malaysia 25% 289 1,169
AY.65AY.65 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N (89%), E156G, F157-, P681R, R158-, T19R, V1264L
Delta Bahrain 24% 330 1,395
AY.85AY.85 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (78%)
Delta Cambodia 21% 122 575
AY.30AY.30 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (82%), F157- (82%), P681R, R158- (82%), T19R
Delta Thailand 20% 516 2,591
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta South Korea 19% 603 3,120
AY.108AY.108 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (90%), F157-, G142D, P681R, R158- (90%), T19R, T95I
Delta Georgia 18% 49 266
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Israel 18% 600 3,310
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Sri Lanka 18% 79 438
AY.102AY.102 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I
Delta Bangladesh 18% 22 122
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Israel 18% 591 3,310
AY.120AY.120 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (81%), E156G, F157-, G142D (57%), P681R, R158-, T19R, T95I (86%)
Delta Pakistan 16% 23 141
AY.122.1AY.122.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (61%), P681R, R158-, T19R, T95I (56%)
Delta Israel 16% 534 3,310
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Hong Kong 16% 14 89
AY.79AY.79 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R
Delta Malaysia 14% 162 1,169
AY.33AY.33 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (54%), P681R, Q613H (53%), R158-, T19R, T29A, T250I
Delta Bahrain 13% 183 1,395
B.1.1.7B.1.1.7 (Alpha) Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Alpha Cambodia 12% 71 575
AY.120AY.120 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (81%), E156G, F157-, G142D (57%), P681R, R158-, T19R, T95I (86%)
Delta India 11% 315 2,832
AY.102AY.102 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I
Delta Bahrain 10% 144 1,395
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
AY.39.1AY.39.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (89%), F157- (90%), P681R, R158- (89%), T19R, T95I (58%)
Delta Australia 90% 6,648 7,362
AY.39.1.1AY.39.1.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R, T95I
Delta New Zealand 68% 957 1,408
AY.24AY.24 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D (57%), P681R, R158-, T19R
Delta Papua New Guinea 47% 94 201
AY.23AY.23 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L
Delta Papua New Guinea 42% 85 201
AY.39.1AY.39.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (89%), F157- (90%), P681R, R158- (89%), T19R, T95I (58%)
Delta New Zealand 29% 410 1,408
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
AY.9.2AY.9.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R
Delta Curacao 60% 93 156
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Ecuador 54% 268 496
AY.99.2AY.99.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (86%), E156G (90%), F157- (90%), P681R, R158- (90%), T19R
Delta Brazil 51% 3,918 7,618
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Trinidad And Tobago 45% 82 181
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Aruba 39% 83 214
P.1P.1 (Gamma) Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Gamma Trinidad And Tobago 39% 70 181
AY.42AY.42 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (72%)
Delta Bonaire 37% 90 241
AY.9.2AY.9.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R
Delta Bonaire 27% 66 241
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Aruba 26% 56 214
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Colombia 26% 190 730
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Chile 25% 1,366 5,379
AY.102AY.102 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I
Delta Peru 24% 534 2,234
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Chile 22% 1,196 5,379
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Bonaire 22% 52 241
AY.39.2AY.39.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, K1073N, P681R, R158-, T19R, T95I (80%)
Delta Peru 20% 454 2,234
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Chile 20% 1,069 5,379
P.1.15P.1.15 (Gamma) Mutations
ProteinMutations
Spike (RBD)E484K, K417T (89%), N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S (88%), T20N, T1027I, V1176F
Gamma Argentina 20% 90 454
C.37C.37 (Lambda) Mutations
ProteinMutations
Spike (RBD)F490S, L452Q
Spike (non-RBD)D253N (84%), D614G, G75V, G252- (84%), L249- (83%), P251- (83%), R246- (83%), S247- (83%), T76I, T250- (83%), T859N, Y248- (83%)
Lambda Argentina 20% 89 454
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Argentina 18% 82 454
AY.100AY.100 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (86%), F157- (87%), P681R, R158- (87%), T19R, T95I (69%)
Delta Ecuador 15% 75 496
B.1.621B.1.621 (Mu) Mutations
ProteinMutations
Spike (RBD)E484K, N501Y, R346K
Spike (non-RBD)D614G, D950N (88%), P681H, T95I, Y144S (78%), Y144T (57%), Y145N (88%), Y145S (52%), ins143T (79%), ins145N (55%)
Mu Colombia 15% 108 730
AY.42AY.42 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (72%)
Delta Curacao 13% 21 156
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Aruba 13% 28 214
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Peru 11% 253 2,234
AY.20AY.20 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (74%), V1104L
Delta Colombia 11% 78 730
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Seychelles 87% 117 134
AY.36AY.36 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (89%), F157- (89%), P681R, R158- (89%), T19R, T95I (80%), V1104L
Delta Nigeria 84% 61 73
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Republic of Congo 66% 38 58
AY.46AY.46 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (87%), T19R
Delta Botswana 52% 150 289
AY.102AY.102 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I
Delta Egypt 39% 28 72
AY.46AY.46 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (87%), T19R
Delta Kenya 39% 47 122
AY.45AY.45 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R (88%), T478K
Spike (non-RBD)D614G, D950N, E156G (79%), F157- (79%), P681R, R158- (79%), T19R
Delta South Africa 37% 352 962
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta France (Réunion Island) 31% 87 277
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Mauritius 26% 16 62
AZ.5AZ.5 Mutations
ProteinMutations
Spike (RBD)E484K
Spike (non-RBD)D80Y (73%), D614G, D796H, P681H, T95I, W258L (60%), Y144- (89%)
NA Mauritius 24% 15 62
AY.16AY.16 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (81%), E156G (52%), F157- (52%), P681R, R158- (52%), T19R
Delta Kenya 22% 27 122
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Egypt 19% 14 72
AY.36AY.36 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (89%), F157- (89%), P681R, R158- (89%), T19R, T95I (80%), V1104L
Delta Mauritius 19% 12 62
AY.39AY.39 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)
Delta Mauritius 19% 12 62
B.1.640B.1.640 Mutations
ProteinMutations
Spike (RBD)F490R, N394S, N501Y, R346S, Y449N
Spike (non-RBD)C136- (68%), D138- (68%), D614G, D936H, E96Q, F140- (68%), G142- (68%), I210T (78%), L141- (68%), N137- (68%), P9L, P139- (68%), P681H, R190S (81%), T859N, V143- (68%), Y144- (68%)
NA Republic of Congo 17% 10 58
AY.116AY.116 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (82%), F157- (85%), G142D (70%), P681R, R158- (82%), T19R
Delta Kenya 17% 21 122
AY.32AY.32 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (90%), E156G (80%), F157- (81%), P681R, R158- (80%), T19R, T572I
Delta South Africa 15% 140 962
AY.33AY.33 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (54%), P681R, Q613H (53%), R158-, T19R, T29A, T250I
Delta France (Réunion Island) 13% 36 277
AY.116AY.116 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (82%), F157- (85%), G142D (70%), P681R, R158- (82%), T19R
Delta Botswana 12% 34 289
AY.118AY.118 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R, T95I (81%)
Delta France (Réunion Island) 11% 30 277
AY.91AY.91 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (84%), F157- (84%), P681R, R158- (84%), T19R
Delta South Africa 10% 99 962
B.1.1.529B.1.1.529 (Omicron) Mutations
ProteinMutations
Spike (RBD)E484A, G339D, G446S, G496S, K417N (90%), N440K, N501Y, Q493R, Q498R, S371L, S373P, S375F, S477N, T478K, Y505H
Spike (non-RBD)A67V, D614G, D796Y, G142D (84%), H69- (89%), H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (83%), N856K, N969K, P681H, Q954H, T95I, T547K, V70- (89%), V143- (87%), Y144- (85%), Y145- (85%), ins214EPE (84%)
Omicron South Africa 10% 99 962
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label State Percent Lineage Count Total Count
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Alaska 42% 705 1,678
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Missouri 38% 1,317 3,497
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Idaho 36% 1,169 3,236
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Kansas 34% 1,032 3,023
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Utah 34% 1,675 4,953
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Maine 33% 628 1,921
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Iowa 32% 1,110 3,437
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Washington 32% 2,920 9,048
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Montana 31% 722 2,316
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Wisconsin 31% 2,745 8,824
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Minnesota 30% 7,416 24,628
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Vermont 30% 1,572 5,243
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta South Carolina 29% 649 2,255
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta South Dakota 29% 203 708
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Oregon 28% 944 3,341
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Nevada 28% 1,659 5,891
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Louisiana 28% 470 1,699
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Nebraska 27% 1,093 4,109
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta Arkansas 26% 445 1,703
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta Mississippi 26% 331 1,283
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Pennsylvania 25% 2,175 8,753
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Hawaii 24% 262 1,071
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Arizona 24% 2,258 9,487
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Connecticut 24% 1,132 4,766
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Michigan 23% 2,880 12,374
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta West Virginia 23% 1,109 4,853
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta California 23% 10,538 46,312
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Wyoming 22% 654 2,912
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta Oklahoma 22% 166 750
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Illinois 22% 1,615 7,455
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta New York 21% 2,949 13,838
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta New Mexico 21% 988 4,641
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Rhode Island 21% 512 2,434
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Delaware 21% 230 1,109
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta North Carolina 21% 1,779 8,604
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta New Hampshire 20% 476 2,323
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta New Jersey 20% 1,519 7,604
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Georgia 20% 1,038 5,208
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Colorado 20% 4,563 23,203
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta Tennessee 20% 995 5,069
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta North Dakota 19% 362 1,868
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Indiana 19% 1,514 7,863
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta District of Columbia 19% 232 1,213
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Texas 19% 2,554 13,378
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Kentucky 19% 633 3,358
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Alabama 19% 222 1,187
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Virginia 19% 712 3,822
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Ohio 19% 1,353 7,308
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Massachusetts 18% 4,211 22,817
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Florida 18% 1,695 9,326
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Maryland 18% 1,271 7,048
*Criteria: Minimum of 20 samples per state.

Top Emerging* Lineages (Past 12 Weeks)

Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Turkey 2021-10-04 33% -> 60% (+27%) 984 / 3,008 1,030 / 1,716
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Austria 2021-11-01 30% -> 45% (+15%) 177 / 584 75 / 166
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Greece 2021-10-18 23% -> 37% (+14%) 73 / 321 53 / 145
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Norway 2021-11-01 22% -> 36% (+14%) 230 / 1,036 130 / 363
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Slovenia 2021-10-18 33% -> 46% (+13%) 699 / 2,119 84 / 184
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Netherlands 2021-11-15 34% -> 46% (+12%) 349 / 1,030 41 / 90
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Kosovo 2021-10-04 20% -> 31% (+11%) 22 / 110 12 / 39
AY.4.2AY.4.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D (85%), P681R, R158-, T19R, T95I, Y145H
Delta Romania 2021-11-01 2% -> 10% (+9%) 7 / 402 10 / 97
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Bosnia and Herzegovina 2021-10-04 2% -> 11% (+8%) 1 / 42 20 / 184
AY.110AY.110 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157- (69%), G142D (83%), P681R, R158-, T19R
Delta Luxembourg 2021-10-18 4% -> 12% (+8%) 32 / 764 97 / 797
AY.46.6AY.46.6 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (88%), E156G (90%), F157-, P681R, R158-, T19R
Delta Switzerland 2021-11-15 9% -> 17% (+8%) 430 / 4,533 84 / 482
AY.121AY.121 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (85%), E156G (89%), F157- (90%), P681R, R158-, T19R, T95I (76%)
Delta Germany 2021-11-15 3% -> 11% (+8%) 299 / 9,285 8 / 73
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Ireland 2021-11-15 4% -> 11% (+7%) 10 / 260 9 / 84
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta France 2021-11-15 19% -> 26% (+7%) 933 / 4,980 63 / 247
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Finland 2021-10-04 16% -> 23% (+7%) 146 / 907 63 / 276
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Sweden 2021-11-15 13% -> 19% (+7%) 505 / 4,017 13 / 68
AY.39AY.39 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)
Delta Czechia 2021-11-01 2% -> 9% (+7%) 29 / 1,436 30 / 352
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Estonia 2021-11-01 8% -> 15% (+6%) 29 / 344 10 / 67
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Denmark 2021-10-04 25% -> 32% (+6%) 1,229 / 4,844 2,392 / 7,592
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Croatia 2021-10-18 32% -> 38% (+6%) 214 / 661 227 / 590
AY.73AY.73 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V (79%), D614G, D950N (59%), E156G, F157-, G142D (70%), P681R, R158-, T19R
Delta Spain 2021-11-15 0% -> 6% (+6%) 3 / 1,190 7 / 117
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Portugal 2021-11-01 13% -> 18% (+5%) 135 / 1,073 138 / 770
AY.4.5AY.4.5 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, D1259Y, E156G, F157-, G142D (61%), P681R, R158-, T19R, T95I (80%)
Delta Italy 2021-11-01 0% -> 4% (+4%) 2 / 2,073 88 / 2,171
AY.92AY.92 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R (88%), T478K (90%)
Spike (non-RBD)D178N (51%), D614G, D950N, E156G (79%), F157- (82%), G142D (53%), P681R, R158- (79%), T19R (88%), T95I (66%)
Delta Poland 2021-11-01 2% -> 4% (+3%) 40 / 2,621 111 / 2,479
AY.39AY.39 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)
Delta Slovakia 2021-10-18 1% -> 4% (+3%) 17 / 1,660 55 / 1,546
AY.39AY.39 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)
Delta Lithuania 2021-11-01 1% -> 2% (+2%) 6 / 977 9 / 384
AY.122.1AY.122.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (61%), P681R, R158-, T19R, T95I (56%)
Delta Bulgaria 2021-10-04 1% -> 2% (+1%) 7 / 879 12 / 544
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Canada 2021-11-15 5% -> 32% (+27%) 112 / 2,449 20 / 63
AY.9.2AY.9.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G (90%), F157-, G142D (57%), P681R, R158- (90%), T19R
Delta Sint Maarten 2021-10-04 39% -> 59% (+20%) 59 / 153 20 / 34
AY.20AY.20 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R, T95I (74%), V1104L
Delta Mexico 2021-11-01 44% -> 60% (+16%) 662 / 1,512 206 / 345
AY.113AY.113 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (80%), E156G (79%), F157- (78%), P681R, R158- (79%), T19R, T95I (83%)
Delta Costa Rica 2021-10-18 41% -> 57% (+15%) 60 / 145 73 / 129
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Martinique 2021-10-18 13% -> 26% (+13%) 3 / 23 7 / 27
AY.119AY.119 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R, T95I (82%)
Delta Puerto Rico 2021-10-04 4% -> 16% (+12%) 7 / 169 13 / 81
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
AY.59AY.59 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V (72%), D614G, D950N, E156G (74%), F157- (74%), P681R, R158- (74%), T19R
Delta Malaysia 2021-11-01 17% -> 51% (+34%) 41 / 241 33 / 65
AY.30AY.30 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (82%), F157- (82%), P681R, R158- (82%), T19R
Delta Cambodia 2021-10-04 29% -> 61% (+32%) 31 / 106 83 / 135
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Japan 2021-10-04 2% -> 30% (+29%) 34 / 2,188 20 / 66
AY.28AY.28 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, A701S (90%), A1078S, D614G, D950N, E156G, F157-, G142D, P681R, R158-, T19R
Delta Sri Lanka 2021-11-15 37% -> 65% (+28%) 26 / 71 13 / 20
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Pakistan 2021-11-01 24% -> 47% (+24%) 9 / 38 18 / 38
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Hong Kong 2021-10-04 12% -> 36% (+24%) 3 / 24 9 / 25
AY.108AY.108 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (90%), F157-, G142D, P681R, R158- (90%), T19R, T95I
Delta Georgia 2021-10-18 10% -> 32% (+23%) 9 / 94 10 / 31
AY.33AY.33 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (54%), P681R, Q613H (53%), R158-, T19R, T29A, T250I
Delta Bahrain 2021-10-04 3% -> 22% (+19%) 5 / 186 82 / 372
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Jordan 2021-10-04 4% -> 21% (+17%) 3 / 69 13 / 62
AY.23AY.23 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (65%), P681R, R158-, T19R, V1264L
Delta Singapore 2021-11-15 44% -> 56% (+12%) 234 / 537 122 / 219
AY.4.4AY.4.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (90%), F157-, G142D (60%), L5F (87%), P681R, R158-, S929T, T19R, T95I (80%)
Delta Bangladesh 2021-10-04 7% -> 16% (+9%) 5 / 76 7 / 44
AY.57AY.57 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V (89%), D614G, D950N, E156G, F157-, G142D (89%), P681R, R158-, T19R
Delta Vietnam 2021-10-04 87% -> 96% (+9%) 53 / 61 47 / 49
AY.120AY.120 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (81%), E156G, F157-, G142D (57%), P681R, R158-, T19R, T95I (86%)
Delta India 2021-10-18 11% -> 19% (+8%) 78 / 699 87 / 448
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Thailand 2021-10-18 2% -> 10% (+8%) 16 / 929 67 / 702
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Israel 2021-10-04 15% -> 21% (+6%) 108 / 703 296 / 1,381
AY.113AY.113 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (80%), E156G (79%), F157- (78%), P681R, R158- (79%), T19R, T95I (83%)
Delta Maldives 2021-10-18 6% -> 12% (+5%) 6 / 97 6 / 52
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
AY.39.1AY.39.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (89%), F157- (90%), P681R, R158- (89%), T19R, T95I (58%)
Delta New Zealand 2021-11-01 26% -> 36% (+10%) 136 / 527 10 / 28
AY.24AY.24 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D (57%), P681R, R158-, T19R
Delta Papua New Guinea 2021-10-04 45% -> 53% (+8%) 65 / 146 29 / 55
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
AY.42AY.42 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (86%), F157- (86%), P681R, R158- (86%), T19R, T95I (72%)
Delta Bonaire 2021-10-04 23% -> 49% (+26%) 19 / 84 40 / 82
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Trinidad And Tobago 2021-10-04 31% -> 52% (+21%) 19 / 62 53 / 102
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Ecuador 2021-10-18 57% -> 77% (+21%) 52 / 92 17 / 22
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Colombia 2021-11-01 5% -> 22% (+17%) 7 / 128 20 / 91
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Chile 2021-10-04 11% -> 26% (+15%) 201 / 1,879 351 / 1,351
C.37C.37 (Lambda) Mutations
ProteinMutations
Spike (RBD)F490S, L452Q
Spike (non-RBD)D253N (84%), D614G, G75V, G252- (84%), L249- (83%), P251- (83%), R246- (83%), S247- (83%), T76I, T250- (83%), T859N, Y248- (83%)
Lambda Argentina 2021-10-04 13% -> 27% (+14%) 23 / 171 48 / 178
AY.4AY.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (71%), P681R, R158-, T19R, T95I (84%)
Delta Curacao 2021-10-18 2% -> 11% (+9%) 1 / 53 5 / 47
AY.34.1AY.34.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (75%), E156G, F157-, L1265F (84%), P681R, Q677H, R158-, T19R, T95I (87%)
Delta Brazil 2021-11-01 6% -> 12% (+6%) 92 / 1,536 61 / 494
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Aruba 2021-10-04 38% -> 43% (+5%) 67 / 177 16 / 37
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Peru 2021-11-01 4% -> 7% (+4%) 23 / 644 6 / 84
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
B.1.1.529B.1.1.529 (Omicron) Mutations
ProteinMutations
Spike (RBD)E484A, G339D, G446S, G496S, K417N (90%), N440K, N501Y, Q493R, Q498R, S371L, S373P, S375F, S477N, T478K, Y505H
Spike (non-RBD)A67V, D614G, D796Y, G142D (84%), H69- (89%), H655Y, L212I (87%), L981F, N211- (87%), N679K, N764K (83%), N856K, N969K, P681H, Q954H, T95I, T547K, V70- (89%), V143- (87%), Y144- (85%), Y145- (85%), ins214EPE (84%)
Omicron South Africa 2021-11-15 28% -> 88% (+60%) 8 / 29 91 / 104
AY.118AY.118 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R, T95I (81%)
Delta France (Réunion Island) 2021-10-18 2% -> 33% (+32%) 1 / 60 22 / 66
AY.46AY.46 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (87%), T19R
Delta Botswana 2021-10-18 46% -> 70% (+24%) 41 / 89 30 / 43
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Spain 2021-09-20 4% -> 27% (+24%) 54 / 1,447 12 / 44
AY.122AY.122 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N (89%), E156G (88%), F157- (89%), G142D (53%), P681R, R158- (89%), T19R
Delta Seychelles 2021-10-18 80% -> 90% (+10%) 44 / 55 19 / 21
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label State 2-Week Period Change Previous Support Current Support
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta South Dakota 2021-11-01 7% -> 33% (+26%) 13 / 174 11 / 33
AY.83AY.83 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, P681R, R158-, T19R
Delta North Dakota 2021-11-01 9% -> 33% (+24%) 45 / 528 35 / 106
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Alabama 2021-11-01 14% -> 33% (+19%) 27 / 198 15 / 46
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta New Hampshire 2021-11-01 13% -> 28% (+15%) 72 / 555 151 / 536
AY.119AY.119 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R, T95I (82%)
Delta Hawaii 2021-10-18 1% -> 16% (+15%) 4 / 396 35 / 223
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Maine 2021-11-01 31% -> 45% (+14%) 162 / 518 120 / 265
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta Texas 2021-11-15 14% -> 27% (+13%) 144 / 1,046 7 / 26
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta Oklahoma 2021-11-01 13% -> 26% (+13%) 22 / 174 17 / 66
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Michigan 2021-11-15 23% -> 36% (+12%) 553 / 2,378 15 / 42
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Alaska 2021-10-04 30% -> 41% (+12%) 117 / 395 232 / 560
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta District of Columbia 2021-11-01 9% -> 21% (+12%) 21 / 228 36 / 173
AY.25AY.25 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (66%), P681R, R158-, T19R
Delta Vermont 2021-10-18 17% -> 28% (+11%) 228 / 1,355 332 / 1,181
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Rhode Island 2021-11-01 14% -> 24% (+10%) 76 / 546 124 / 512
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta Arkansas 2021-10-18 26% -> 35% (+10%) 158 / 619 116 / 327
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Mississippi 2021-10-04 9% -> 18% (+10%) 47 / 542 75 / 408
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Colorado 2021-11-15 24% -> 33% (+9%) 271 / 1,149 34 / 103
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Connecticut 2021-10-04 17% -> 25% (+8%) 165 / 983 324 / 1,302
AY.39AY.39 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), P681R, R158- (88%), T19R, T95I (70%)
Delta Arizona 2021-11-01 4% -> 11% (+8%) 103 / 2,716 218 / 1,928
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Louisiana 2021-10-04 8% -> 15% (+7%) 54 / 709 74 / 495
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Georgia 2021-11-01 21% -> 28% (+7%) 212 / 999 98 / 345
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Virginia 2021-11-01 17% -> 23% (+7%) 157 / 941 122 / 522
AY.3AY.3 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R
Delta New York 2021-11-15 8% -> 14% (+7%) 158 / 2,074 11 / 77
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta New Jersey 2021-11-15 24% -> 31% (+7%) 303 / 1,255 8 / 26
AY.44AY.44 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (88%), G142D (56%), P681R, R158- (87%), T19R
Delta Montana 2021-10-04 25% -> 32% (+7%) 179 / 716 228 / 722
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Iowa 2021-11-01 32% -> 39% (+7%) 280 / 862 230 / 590
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Nebraska 2021-10-04 22% -> 29% (+6%) 226 / 1,015 282 / 981
AY.119AY.119 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R, T95I (82%)
Delta Delaware 2021-10-18 2% -> 9% (+6%) 8 / 320 17 / 194
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Kansas 2021-10-04 32% -> 38% (+6%) 251 / 785 204 / 539
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Massachusetts 2021-11-01 18% -> 24% (+6%) 894 / 5,020 1,342 / 5,690
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta South Carolina 2021-11-01 7% -> 13% (+6%) 31 / 421 20 / 155
AY.103AY.103 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R
Delta Kentucky 2021-11-01 18% -> 24% (+5%) 133 / 720 97 / 410
B.1.617.2B.1.617.2 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (88%), F157- (88%), G142D (76%), P681R, R158- (88%), T19R
Delta Idaho 2021-11-01 4% -> 8% (+4%) 32 / 802 24 / 295
AY.100AY.100 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (86%), F157- (87%), P681R, R158- (87%), T19R, T95I (69%)
Delta Wyoming 2021-11-01 1% -> 4% (+3%) 7 / 558 8 / 180
AY.100AY.100 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (86%), F157- (87%), P681R, R158- (87%), T19R, T95I (69%)
Delta Oregon 2021-11-01 1% -> 4% (+2%) 13 / 953 18 / 471
AY.26AY.26 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R, V1264L
Delta Nevada 2021-11-01 1% -> 4% (+2%) 19 / 1,517 35 / 946
AY.107AY.107 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (87%), F157- (87%), H1101Y, P681R, R158- (87%), T19R, T95I (73%)
Delta Utah 2021-10-18 1% -> 3% (+2%) 19 / 1,493 46 / 1,322
AY.119AY.119 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (62%), P681R, R158-, T19R, T95I (82%)
Delta Illinois 2021-10-18 1% -> 3% (+2%) 32 / 2,215 67 / 2,043
AY.3.1AY.3.1 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (53%), P681R, R158-, T19R
Delta Tennessee 2021-10-04 2% -> 3% (+2%) 33 / 2,182 49 / 1,581
AY.43AY.43 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (51%), P681R, R158-, T19R
Delta Florida 2021-11-01 1% -> 2% (+2%) 17 / 1,966 20 / 830
AY.26AY.26 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D (56%), P681R, R158-, T19R, V1264L
Delta Maryland 2021-11-01 1% -> 3% (+2%) 18 / 1,629 17 / 644
AY.46.4AY.46.4 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, E661D, F157-, G142D (53%), P681R, R158-, T19R
Delta New Mexico 2021-10-04 1% -> 2% (+1%) 11 / 1,189 27 / 1,204
AY.47AY.47 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)A222V, D614G, D950N, E156G, F157-, G142D (60%), P681R, R158-, T19R, V289I
Delta Missouri 2021-11-01 1% -> 2% (+1%) 10 / 960 8 / 340
AY.118AY.118 (Delta) Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (59%), P681R, R158-, T19R, T95I (81%)
Delta Washington 2021-10-04 1% -> 2% (+1%) 24 / 2,767 48 / 2,266
*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

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Dashboard Timeline

November 27, 2021
01:30PM

WHO Labels Updated

Added Omicron WHO variant
November 18, 2021
04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages
April 16, 2021
08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page
April 16, 2021
08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily
April 05, 2021
03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page
March 23, 2021
06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release
November 13, 2020
04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!
June 15, 2020
12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts
June 04, 2020
08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time
June 02, 2020
12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash
May 26, 2020
12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b
May 11, 2020
12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10
April 27, 2020
12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships
April 03, 2020
12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc
April 02, 2020
10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files
March 31, 2020
12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes
January 10, 2020
12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling



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