Regeneron COVID-19 Dashboard

Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

10,924,668

SARS-CoV-2 (hCoV-19) genomes

May 27, 2022
05:31 PM ET

Last data update

Top Lineages Per Country (Past 12 Weeks)

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

81%

1,902

2,335

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Republic of Serbia

81%

111

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

81%

8,631

10,657

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

79%

4,683

5,898

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ireland

78%

5,927

7,596

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

77%

11,171

14,453

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

76%

35,444

46,348

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

74%

5,914

7,977

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

73%

237,876

328,087

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

72%

693

959

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

72%

4,955

6,878

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Andorra

72%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

71%

92,611

131,344

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

70%

65,607

93,444

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

70%

792

1,136

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

68%

2,305

3,386

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Russia

68%

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (59%)
Spike (non-RBD)	D614G (88%), P681H (59%)

Austria

67%

16,306

24,307

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

66%

5,118

7,798

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

65%

7,891

12,151

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

64%

7,594

11,956

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Greece

63%

652

1,036

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kosovo

62%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

61%

3,252

5,308

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

60%

7,549

12,626

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

59%

2,454

4,146

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Liechtenstein

56%

184

331

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

54%

1,013

1,892

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montenegro

51%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Lithuania

51%

2,298

4,492

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

46%

1,783

3,910

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

43%

3,056

7,028

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

41%

2,896

7,028

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

38%

1,484

3,910

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Lithuania

34%

1,524

4,492

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Montenegro

29%

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

25%

23,611

93,444

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Slovenia

24%

998

4,146

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

21%

390

1,892

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

20%

1,570

7,798

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Russia

20%

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

20%

188

959

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Liechtenstein

19%

331

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Finland

18%

346

1,892

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

17%

1,203

6,878

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

16%

2,020

12,626

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

16%

3,837

24,307

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

14%

18,917

131,344

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

14%

1,743

12,151

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kosovo

14%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Croatia

14%

477

3,386

BA.2.23BA.2.23 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Andorra

14%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371L (82%), S373P (83%), S375F (83%), K417N (62%), N440K (63%), G446S (65%), S477N (85%), T478K (86%), E484A (85%), Q493R (84%), G496S (81%), Q498R (81%), N501Y (81%), Y505H (82%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (83%), L212I (83%), ins214EPE (74%), T547K, D614G, H655Y, N679K, P681H, N764K (85%), D796Y, N856K, Q954H, N969K, L981F

Omicron

Kosovo

12%

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montenegro

12%

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

12%

1,291

10,657

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

12%

617

5,308

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

11%

123

1,136

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

10%

350

3,386

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guadeloupe

75%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

68%

110

161

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Jamaica

68%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

61%

149

245

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Guatemala

59%

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Panama

57%

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Saint Martin

56%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

52%

222

428

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Mexico

42%

725

1,710

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

42%

16,601

39,761

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United States

41%

92,629

228,650

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Saint Martin

37%

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

27%

209

773

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Puerto Rico

26%

111

428

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Costa Rica

26%

198

773

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

22%

384

1,710

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Martinique

22%

245

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

United States

20%

45,277

228,650

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guadeloupe

20%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

19%

145

773

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Canada

18%

7,249

39,761

BA.1.1.16BA.1.1.16 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L, S373P, S375F, K417N, N440K, G446S, S477N, T478K, E484A, Q493R, G496S, Q498R, N501Y, Y505H
Spike (non-RBD)	A67V (85%), H69- (83%), V70- (83%), T95I (85%), G142D (85%), V143- (85%), Y144- (85%), Y145- (85%), N211- (79%), L212I (79%), ins214EPE (74%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Panama

18%

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

18%

7,071

39,761

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

17%

133

773

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

United States

12%

28,525

228,650

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guatemala

12%

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

12%

161

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

11%

196

1,710

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Jamaica

11%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Panama

11%

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371L (82%), S373P (83%), S375F (83%), K417N (62%), N440K (63%), G446S (65%), S477N (85%), T478K (86%), E484A (85%), Q493R (84%), G496S (81%), Q498R (81%), N501Y (81%), Y505H (82%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (83%), L212I (83%), ins214EPE (74%), T547K, D614G, H655Y, N679K, P681H, N764K (85%), D796Y, N856K, Q954H, N969K, L981F

Omicron

Guatemala

11%

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brunei

94%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Maldives

90%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sri Lanka

89%

102

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nepal

80%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

73%

107

146

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iran

72%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

72%

3,024

4,222

BA.2.2BA.2.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, I1221T

Omicron

Hong Kong

68%

1,025

1,503

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

66%

15,028

22,703

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

61%

101

165

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

61%

2,643

4,325

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

54%

137

256

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (59%)
Spike (non-RBD)	D614G (88%), P681H (59%)

South Korea

52%

5,384

10,321

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

50%

1,427

2,874

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

48%

1,438

2,995

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

39%

635

1,628

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

33%

355

1,078

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

33%

532

1,628

BA.2.3.2BA.2.3.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (80%), S477N (85%), T478K (85%), E484A (85%), Q493R (85%), Q498R (85%), N501Y (85%), Y505H (85%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

31%

330

1,078

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

25%

256

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

24%

258

1,078

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

23%

2,421

10,321

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

22%

165

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

21%

889

4,325

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (59%)
Spike (non-RBD)	D614G (88%), P681H (59%)

Pakistan

21%

146

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

20%

609

2,995

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

19%

2,227

11,636

BA.1.1.2BA.1.1.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L, S373P, S375F, K417N, N440K, G446S, S477N, T478K, E484A, Q493R, G496S, Q498R, N501Y, Y505H
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211-, L212I, ins214EPE, T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Japan

19%

2,170

11,636

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

17%

262

1,503

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

16%

1,851

11,636

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (80%), S477N (89%), T478K (90%), E484A (89%), Q493R (83%), Q498R (86%), N501Y (87%), Y505H (88%)
Spike (non-RBD)	T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

16%

256

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

16%

449

2,874

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Iran

14%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Korea

13%

1,322

10,321

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (80%), S477N (89%), T478K (90%), E484A (89%), Q493R (83%), Q498R (86%), N501Y (87%), Y505H (88%)
Spike (non-RBD)	T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

11%

340

2,995

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (80%), S477N (89%), T478K (90%), E484A (89%), Q493R (83%), Q498R (86%), N501Y (87%), Y505H (88%)
Spike (non-RBD)	T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

11%

460

4,222

BA.2.10.1BA.2.10.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D (77%), V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, G798D, Q954H, N969K

Omicron

Singapore

10%

300

2,874

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Guam

90%

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Northern Mariana Islands

89%

442

497

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

59%

15,054

25,389

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

51%

1,833

3,610

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Solomon Islands

36%

185

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (80%), S477N (89%), T478K (90%), E484A (89%), Q493R (83%), Q498R (86%), N501Y (87%), Y505H (88%)
Spike (non-RBD)	T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

35%

1,249

3,610

BA.2.3.3BA.2.3.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Solomon Islands

31%

185

AY.127.3AY.127.3 (Delta) Mutations

Protein	Mutations
Spike (RBD)	G446R, L452R, T478K
Spike (non-RBD)	T19R, T95I, G142D, E156G, F157-, R158-, Q613H (64%), D614G, P681R, D950N, L1063F

Delta

Solomon Islands

29%

185

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Argentina

68%

136

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Ecuador

64%

119

185

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

64%

104

163

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Peru

47%

406

862

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Chile

43%

1,120

2,606

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

41%

180

440

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

37%

217

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

36%

195

BA.2.30BA.2.30 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

34%

195

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

31%

1,300

4,181

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

28%

740

2,606

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Colombia

28%

124

440

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Brazil

27%

1,141

4,181

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

26%

217

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Trinidad And Tobago

18%

217

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371L (82%), S373P (83%), S375F (83%), K417N (62%), N440K (63%), G446S (65%), S477N (85%), T478K (86%), E484A (85%), Q493R (84%), G496S (81%), Q498R (81%), N501Y (81%), Y505H (82%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (83%), L212I (83%), ins214EPE (74%), T547K, D614G, H655Y, N679K, P681H, N764K (85%), D796Y, N856K, Q954H, N969K, L981F

Omicron

Peru

17%

148

862

BA.2.12BA.2.12 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N (88%), S477N (60%), T478K (60%), E484A (60%), Q493R (60%), Q498R (60%), N501Y (60%), Y505H (60%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Curacao

15%

195

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371L (82%), S373P (83%), S375F (83%), K417N (62%), N440K (63%), G446S (65%), S477N (85%), T478K (86%), E484A (85%), Q493R (84%), G496S (81%), Q498R (81%), N501Y (81%), Y505H (82%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (83%), L212I (83%), ins214EPE (74%), T547K, D614G, H655Y, N679K, P681H, N764K (85%), D796Y, N856K, Q954H, N969K, L981F

Omicron

Brazil

14%

589

4,181

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

14%

118

862

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371L (82%), S373P (83%), S375F (83%), K417N (62%), N440K (63%), G446S (65%), S477N (85%), T478K (86%), E484A (85%), Q493R (84%), G496S (81%), Q498R (81%), N501Y (81%), Y505H (82%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (83%), L212I (83%), ins214EPE (74%), T547K, D614G, H655Y, N679K, P681H, N764K (85%), D796Y, N856K, Q954H, N969K, L981F

Omicron

Ecuador

13%

185

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371L (82%), S373P (83%), S375F (83%), K417N (62%), N440K (63%), G446S (65%), S477N (85%), T478K (86%), E484A (85%), Q493R (84%), G496S (81%), Q498R (81%), N501Y (81%), Y505H (82%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (83%), L212I (83%), ins214EPE (74%), T547K, D614G, H655Y, N679K, P681H, N764K (85%), D796Y, N856K, Q954H, N969K, L981F

Omicron

Colombia

11%

440

BA.2.13BA.2.13 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452M, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, D936Y (53%), Q954H, N969K

Omicron

Bonaire

10%

163

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Argentina

10%

136

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

Country

Percent

Lineage Count

Total Count

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

84%

1,102

1,315

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

64%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

63%

145

231

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (59%)
Spike (non-RBD)	D614G (88%), P681H (59%)

Senegal

47%

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (82%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (51%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

40%

1,689

4,216

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

39%

1,665

4,216

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Senegal

26%

BA.2.23BA.2.23 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

17%

BA.2.10BA.2.10 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (80%), S477N (89%), T478K (90%), E484A (89%), Q493R (83%), Q498R (86%), N501Y (87%), Y505H (88%)
Spike (non-RBD)	T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

15%

231

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

13%

535

4,216

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (59%)
Spike (non-RBD)	D614G (88%), P681H (59%)

Botswana

12%

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

12%

231

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Senegal

12%

*Criteria: Above 10%, minimum of 50 samples per country.

Lineage

WHO Label

State

Percent

Lineage Count

Total Count

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Rhode Island

56%

1,022

1,833

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alaska

55%

413

746

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Texas

51%

4,058

7,958

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

New Mexico

47%

513

1,083

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

District of Columbia

47%

1,496

3,163

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Florida

47%

4,971

10,560

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oklahoma

46%

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nebraska

46%

584

1,268

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Jersey

45%

5,726

12,585

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Maryland

45%

2,176

4,791

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Virginia

45%

2,461

5,439

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Massachusetts

45%

8,623

19,309

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Washington

44%

5,242

11,934

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Delaware

44%

498

1,143

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

43%

1,109

2,552

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Illinois

43%

3,114

7,258

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Idaho

43%

174

408

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wisconsin

42%

1,536

3,633

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nevada

42%

836

1,978

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Tennessee

41%

445

1,078

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arizona

41%

1,489

3,621

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

West Virginia

41%

288

704

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Missouri

40%

450

1,114

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Minnesota

40%

1,348

3,342

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ohio

40%

1,135

2,817

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

California

40%

11,584

28,773

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indiana

40%

693

1,733

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pennsylvania

40%

2,914

7,343

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wyoming

39%

102

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hawaii

39%

1,001

2,562

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Michigan

39%

1,715

4,414

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Connecticut

39%

2,504

6,449

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Hampshire

39%

321

831

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alabama

39%

161

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oregon

38%

957

2,504

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New York

38%

12,228

32,239

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

38%

335

885

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arkansas

38%

144

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Dakota

37%

338

909

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Louisiana

36%

448

1,244

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kansas

35%

235

662

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mississippi

35%

101

285

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colorado

35%

3,221

9,186

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Carolina

35%

360

1,030

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Utah

34%

934

2,731

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Carolina

34%

2,815

8,305

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Maine

33%

432

1,315

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Iowa

32%

330

1,017

BA.1.1BA.1.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, R346K, S371L (87%), S373P (88%), S375F (88%), K417N (70%), N440K (74%), G446S (75%), S477N, T478K, E484A, Q493R, G496S (89%), Q498R (88%), N501Y (89%), Y505H (89%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (87%), L212I (87%), ins214EPE (78%), T547K, D614G, H655Y, N679K, P681H, N764K, D796Y, N856K, Q954H, N969K, L981F

Omicron

Montana

32%

223

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vermont

25%

782

3,100

*Criteria: Minimum of 20 samples per state.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Liechtenstein

2022-04-04

59% -> 93% (+33%)

64 / 108

25 / 27

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montenegro

2022-03-21

37% -> 61% (+24%)

10 / 27

27 / 44

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovenia

2022-03-21

44% -> 68% (+23%)

886 / 1,998

732 / 1,079

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (82%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (51%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Netherlands

2022-05-16

2% -> 24% (+23%)

17 / 984

8 / 33

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Turkey

2022-03-21

70% -> 92% (+22%)

730 / 1,047

426 / 465

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Romania

2022-04-18

74% -> 96% (+21%)

148 / 199

45 / 47

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Portugal

2022-05-02

12% -> 33% (+21%)

132 / 1,074

306 / 930

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Austria

2022-05-16

11% -> 30% (+19%)

417 / 3,827

159 / 529

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Croatia

2022-03-21

53% -> 71% (+18%)

513 / 967

703 / 990

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Italy

2022-03-21

46% -> 63% (+17%)

1,397 / 3,032

1,284 / 2,043

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Switzerland

2022-05-16

3% -> 18% (+15%)

9 / 321

9 / 50

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Ireland

2022-05-02

1% -> 14% (+13%)

5 / 445

42 / 296

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Spain

2022-03-21

49% -> 61% (+13%)

1,940 / 3,969

1,891 / 3,078

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Finland

2022-04-04

50% -> 62% (+12%)

236 / 471

341 / 546

BA.1BA.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371L (82%), S373P (83%), S375F (83%), K417N (62%), N440K (63%), G446S (65%), S477N (85%), T478K (86%), E484A (85%), Q493R (84%), G496S (81%), Q498R (81%), N501Y (81%), Y505H (82%)
Spike (non-RBD)	A67V, H69-, V70-, T95I, G142D, V143-, Y144-, Y145-, N211- (83%), L212I (83%), ins214EPE (74%), T547K, D614G, H655Y, N679K, P681H, N764K (85%), D796Y, N856K, Q954H, N969K, L981F

Omicron

Greece

2022-04-04

2% -> 15% (+12%)

9 / 408

28 / 193

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Poland

2022-03-21

39% -> 51% (+12%)

713 / 1,836

577 / 1,141

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France

2022-03-21

68% -> 80% (+11%)

8,528 / 12,457

11,408 / 14,319

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Republic of Serbia

2022-04-04

74% -> 84% (+10%)

26 / 35

64 / 76

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Czechia

2022-03-21

35% -> 44% (+9%)

666 / 1,920

834 / 1,892

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Belgium

2022-03-21

69% -> 79% (+9%)

2,258 / 3,259

2,658 / 3,384

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Estonia

2022-03-21

65% -> 75% (+9%)

239 / 365

247 / 331

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Luxembourg

2022-03-21

70% -> 78% (+8%)

956 / 1,362

1,050 / 1,338

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Slovakia

2022-03-21

58% -> 66% (+8%)

1,357 / 2,338

1,668 / 2,517

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Germany

2022-03-21

63% -> 71% (+8%)

25,866 / 40,954

20,413 / 28,718

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sweden

2022-04-18

17% -> 22% (+6%)

288 / 1,729

184 / 830

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United Kingdom

2022-03-21

70% -> 75% (+5%)

105,117 / 150,036

73,720 / 97,765

AY.4.5AY.4.5 (Delta) Mutations

Protein	Mutations
Spike (RBD)	L452R, T478K
Spike (non-RBD)	T19R, T95I (84%), G142D (70%), E156G, F157-, R158-, D614G, P681R, D950N, D1259Y

Delta

Lithuania

2022-03-21

0% -> 4% (+3%)

6 / 1,458

34 / 958

BA.5BA.5 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Denmark

2022-05-16

1% -> 2% (+2%)

39 / 7,284

18 / 782

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Norway

2022-04-18

1% -> 3% (+2%)

19 / 1,348

17 / 550

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sint Maarten

2022-03-21

27% -> 88% (+61%)

8 / 30

43 / 49

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Martinique

2022-03-21

40% -> 71% (+31%)

37 / 93

39 / 55

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Jamaica

2022-04-04

58% -> 88% (+30%)

22 / 38

38 / 43

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Puerto Rico

2022-05-02

6% -> 33% (+27%)

8 / 136

7 / 21

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Costa Rica

2022-05-02

26% -> 49% (+23%)

56 / 216

20 / 41

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

United States

2022-03-21

23% -> 45% (+21%)

8,034 / 34,620

18,591 / 41,705

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mexico

2022-04-04

17% -> 33% (+16%)

68 / 412

96 / 293

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Canada

2022-03-21

25% -> 40% (+15%)

2,050 / 8,062

4,433 / 11,052

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (59%)
Spike (non-RBD)	D614G (88%), P681H (59%)

South Korea

2022-05-02

62% -> 99% (+37%)

1,572 / 2,522

395 / 398

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Philippines

2022-05-02

22% -> 52% (+30%)

10 / 45

12 / 23

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pakistan

2022-03-21

55% -> 83% (+28%)

28 / 51

19 / 23

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

India

2022-04-04

63% -> 85% (+22%)

667 / 1,061

675 / 792

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hong Kong

2022-04-04

4% -> 26% (+22%)

18 / 421

53 / 204

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Japan

2022-04-18

22% -> 41% (+19%)

632 / 2,908

282 / 685

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Sri Lanka

2022-03-21

86% -> 100% (+14%)

68 / 79

21 / 21

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Cambodia

2022-04-18

21% -> 33% (+12%)

12 / 57

9 / 27

BA.2.3.2BA.2.3.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (80%), S477N (85%), T478K (85%), E484A (85%), Q493R (85%), Q498R (85%), N501Y (85%), Y505H (85%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Vietnam

2022-04-18

24% -> 35% (+12%)

48 / 204

23 / 65

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Malaysia

2022-04-04

61% -> 72% (+11%)

1,249 / 2,049

425 / 588

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Israel

2022-03-21

59% -> 69% (+10%)

3,374 / 5,713

3,585 / 5,165

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Thailand

2022-03-21

41% -> 51% (+10%)

321 / 789

478 / 946

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Singapore

2022-04-04

44% -> 51% (+7%)

249 / 567

274 / 534

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indonesia

2022-03-21

36% -> 44% (+7%)

314 / 867

237 / 544

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2.3.3BA.2.3.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Solomon Islands

2022-04-04

5% -> 55% (+50%)

1 / 20

11 / 20

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Australia

2022-03-21

40% -> 59% (+19%)

2,168 / 5,380

4,306 / 7,276

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Zealand

2022-03-21

27% -> 43% (+16%)

186 / 700

230 / 540

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Northern Mariana Islands

2022-03-21

2% -> 12% (+10%)

7 / 380

10 / 85

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

French Guiana

2022-03-21

48% -> 91% (+44%)

10 / 21

21 / 23

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Brazil

2022-04-04

35% -> 63% (+28%)

257 / 736

382 / 603

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Trinidad And Tobago

2022-03-21

8% -> 35% (+27%)

6 / 72

12 / 34

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Peru

2022-04-18

31% -> 58% (+27%)

40 / 128

54 / 93

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colombia

2022-03-21

22% -> 45% (+23%)

30 / 137

56 / 124

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Chile

2022-04-18

31% -> 43% (+12%)

212 / 691

203 / 474

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Bonaire

2022-04-04

63% -> 73% (+10%)

60 / 95

24 / 33

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Curacao

2022-03-21

29% -> 38% (+9%)

14 / 48

22 / 58

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

Country

2-Week Period

Change

Previous Support

Current Support

BA.2.23BA.2.23 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Botswana

2022-04-18

8% -> 38% (+30%)

2 / 26

8 / 21

BA.4BA.4 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (82%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)	V3G (51%), T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

South Africa

2022-04-18

38% -> 57% (+19%)

323 / 852

770 / 1,349

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

France (Réunion Island)

2022-03-21

73% -> 84% (+11%)

320 / 437

256 / 305

UnassignedUnassigned Mutations

Protein	Mutations
Spike (RBD)	N501Y (59%)
Spike (non-RBD)	D614G (88%), P681H (59%)

Senegal

2022-03-21

22% -> 32% (+10%)

6 / 27

7 / 22

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mauritius

2022-03-21

59% -> 65% (+6%)

55 / 94

85 / 131

*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.

Lineage

WHO Label

State

2-Week Period

Change

Previous Support

Current Support

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Idaho

2022-03-21

9% -> 52% (+43%)

7 / 75

44 / 84

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Mississippi

2022-03-21

8% -> 47% (+39%)

3 / 36

18 / 38

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Texas

2022-03-21

21% -> 57% (+36%)

304 / 1,432

1,039 / 1,807

BA.2.9BA.2.9 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kansas

2022-05-16

7% -> 41% (+34%)

15 / 230

13 / 32

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Oregon

2022-03-21

13% -> 43% (+30%)

50 / 397

186 / 432

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

West Virginia

2022-04-04

21% -> 52% (+30%)

20 / 94

31 / 60

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Kentucky

2022-03-21

12% -> 41% (+30%)

20 / 169

51 / 123

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Rhode Island

2022-05-02

19% -> 49% (+29%)

88 / 455

73 / 150

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

South Carolina

2022-04-18

17% -> 45% (+28%)

33 / 196

120 / 265

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Ohio

2022-03-21

15% -> 43% (+28%)

54 / 359

206 / 476

BA.2.12BA.2.12 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N (88%), S477N (60%), T478K (60%), E484A (60%), Q493R (60%), Q498R (60%), N501Y (60%), Y505H (60%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maine

2022-04-18

0% -> 29% (+28%)

1 / 241

71 / 248

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Iowa

2022-04-04

2% -> 30% (+28%)

3 / 139

51 / 171

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nebraska

2022-04-04

37% -> 65% (+28%)

51 / 137

118 / 182

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Georgia

2022-03-21

24% -> 51% (+27%)

85 / 349

219 / 426

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Arkansas

2022-04-18

32% -> 59% (+27%)

10 / 31

16 / 27

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Dakota

2022-03-21

13% -> 40% (+26%)

18 / 136

46 / 116

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Connecticut

2022-03-21

23% -> 49% (+26%)

237 / 1,017

453 / 923

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

North Carolina

2022-03-21

12% -> 37% (+26%)

93 / 808

282 / 759

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Arizona

2022-05-02

15% -> 39% (+25%)

105 / 722

341 / 870

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Minnesota

2022-04-04

25% -> 50% (+24%)

133 / 526

422 / 848

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Indiana

2022-03-21

19% -> 43% (+24%)

43 / 226

90 / 208

BA.2.12BA.2.12 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S (88%), K417N (88%), S477N (60%), T478K (60%), E484A (60%), Q493R (60%), Q498R (60%), N501Y (60%), Y505H (60%)
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Vermont

2022-04-04

3% -> 27% (+24%)

20 / 772

238 / 889

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Virginia

2022-03-21

28% -> 52% (+24%)

173 / 619

517 / 1,000

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

California

2022-03-21

19% -> 42% (+24%)

1,055 / 5,645

2,603 / 6,161

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Washington

2022-03-21

19% -> 42% (+23%)

270 / 1,436

1,015 / 2,418

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Pennsylvania

2022-03-21

25% -> 48% (+23%)

296 / 1,162

626 / 1,303

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Colorado

2022-03-21

10% -> 32% (+22%)

208 / 2,053

641 / 1,988

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Alabama

2022-05-02

24% -> 46% (+22%)

5 / 21

36 / 79

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Tennessee

2022-03-21

19% -> 40% (+21%)

28 / 147

53 / 131

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Florida

2022-03-21

30% -> 51% (+21%)

509 / 1,697

1,025 / 1,995

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Delaware

2022-05-02

31% -> 52% (+21%)

112 / 364

112 / 215

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Hampshire

2022-04-04

8% -> 29% (+21%)

11 / 136

98 / 335

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Massachusetts

2022-03-21

32% -> 53% (+21%)

987 / 3,050

2,413 / 4,545

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Maryland

2022-05-16

45% -> 65% (+21%)

492 / 1,103

45 / 69

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Utah

2022-03-21

12% -> 33% (+21%)

76 / 609

158 / 479

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

Louisiana

2022-04-18

8% -> 28% (+20%)

14 / 177

77 / 274

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New Jersey

2022-05-02

33% -> 53% (+20%)

955 / 2,872

1,634 / 3,068

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Michigan

2022-03-21

19% -> 39% (+20%)

145 / 759

340 / 878

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Nevada

2022-03-21

25% -> 45% (+20%)

67 / 267

116 / 260

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Missouri

2022-03-21

14% -> 33% (+20%)

25 / 181

50 / 150

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Wisconsin

2022-03-21

24% -> 43% (+19%)

186 / 791

362 / 849

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

New Mexico

2022-04-04

18% -> 37% (+19%)

42 / 231

95 / 256

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

District of Columbia

2022-05-02

30% -> 48% (+19%)

239 / 809

441 / 912

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Hawaii

2022-03-21

20% -> 38% (+18%)

53 / 269

146 / 384

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Montana

2022-03-21

4% -> 21% (+17%)

2 / 57

8 / 39

BA.2BA.2 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Illinois

2022-03-21

26% -> 43% (+16%)

317 / 1,203

712 / 1,674

BA.2.3BA.2.3 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (88%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K

Omicron

Alaska

2022-03-21

51% -> 66% (+15%)

154 / 301

150 / 227

BA.2.12.1BA.2.12.1 (Omicron) Mutations

Protein	Mutations
Spike (RBD)	G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452Q, S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)	T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, S704L, N764K, D796Y, Q954H, N969K

Omicron

New York

2022-04-18

33% -> 46% (+13%)

2,635 / 8,058

3,436 / 7,470

*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

Dashboard Timeline

January 07, 2022

04:30PM

Top/emerging variant graphs updated

Added overlays and country-specific information to variant graphs

November 27, 2021

01:30PM

WHO Labels Updated

Added Omicron WHO variant

November 18, 2021

04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages

April 16, 2021

08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page

April 16, 2021

08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily

April 05, 2021

03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page

March 23, 2021

06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release

November 13, 2020

04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!

June 15, 2020

12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts

June 04, 2020

08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time

June 02, 2020

12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash

May 26, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b

May 11, 2020

12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10

April 27, 2020

12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships

April 03, 2020

12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc

April 02, 2020

10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files

March 31, 2020

12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes

January 10, 2020

12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling

Welcome to the Regeneron COVID-19 Dashboard

10,924,668

May 27, 2022
05:31 PM ET

05:31 PM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

Welcome to the Regeneron COVID-19 Dashboard

10,924,668

May 27, 202205:31 PM ET

05:31 PM ET

Top Lineages Per Country (Past 12 Weeks)

Top* Lineages (Past 12 Weeks)

Top Emerging* Lineages (Past 12 Weeks)

Data Timeline

Dashboard Timeline

Top/emerging variant graphs updated

WHO Labels Updated

Dashboard UI/graphs updated

Dashboard UI/graphs updated

Dashboard backend pipeline overhauled

Dashboard UI/graphs updated

Dashboard performance overhauled

Dashboard UI/graphs updated

Dashboard graphs upgraded

Dashboard data source changed

Dashboard UI upgraded

Variant tracking expanded

Variant tracking expanded

Phylogenetic analysis added

Automated QC pipeline created

First version of dashboard created

Patient metadata tracking started

First data downloaded

May 27, 2022
05:31 PM ET