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Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

1,969,713

SARS-CoV-2 (hCoV-19) genomes


June 15, 2021

03:31 AM ET

Last data update


Top Lineages Per Country (Past 12 Weeks)

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Top* Lineages (Past 12 Weeks)

Lineage Country Percent Lineage Count Total Count
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Slovakia 99% 519 523
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Denmark 97% 21,323 21,979
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Poland 96% 5,529 5,743
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Sweden 96% 9,702 10,107
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Netherlands 95% 8,571 9,042
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Lithuania 95% 3,668 3,877
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Norway 94% 1,939 2,058
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Germany 94% 46,616 49,730
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Slovenia 92% 2,849 3,084
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Switzerland 92% 8,239 8,940
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Czechia 91% 656 717
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Austria 90% 938 1,039
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Ireland 90% 4,283 4,745
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Italy 85% 5,390 6,356
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Romania 84% 141 167
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Latvia 83% 114 138
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
France 82% 8,563 10,486
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Belgium 81% 5,638 6,934
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Finland 81% 362 446
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Luxembourg 80% 1,464 1,825
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Spain 79% 4,300 5,436
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Portugal 79% 937 1,185
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Greece 77% 2,076 2,695
B.1B.1 Mutations
ProteinMutations
Spike (non-RBD)D614G
Turkey 57% 282 491
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Malta 55% 49 89
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
United Kingdom 52% 31,313 60,488
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
United Kingdom 46% 27,929 60,488
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Russia 41% 272 662
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Malta 20% 18 89
B.1.1.318B.1.1.318 Mutations
ProteinMutations
Spike (RBD)E484K
Spike (non-RBD)D614G, D796H, P681H, T95I, Y144-
Greece 20% 527 2,695
B.1.1B.1.1 Mutations
ProteinMutations
Spike (non-RBD)D614G
Turkey 17% 82 491
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Russia 15% 102 662
B.1.177.79B.1.177.79 Mutations
ProteinMutations
Spike (non-RBD)A222V (72%), D614G (70%), L18F (72%)
Latvia 12% 16 138
B.1.351B.1.351 Mutations
ProteinMutations
Spike (RBD)E484K (84%), K417N (86%), N501Y (84%)
Spike (non-RBD)A243- (81%), A701V, D80A (87%), D215G (86%), D614G, L242- (80%), L244- (80%)
Finland 10% 46 446
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage Country Percent Lineage Count Total Count
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Sint Maarten 87% 123 142
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Puerto Rico 73% 182 249
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
United States 66% 67,413 101,720
B.1.1.519B.1.1.519 Mutations
ProteinMutations
Spike (RBD)T478K
Spike (non-RBD)D614G, P681H, T732A
Mexico 55% 1,602 2,934
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Costa Rica 49% 33 67
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Canada 48% 1,460 3,065
A.2.5.1A.2.5.1 Mutations
ProteinMutations
Spike (RBD)L452R
Spike (non-RBD)D215A (55%), D614G, G142- (85%), L141- (85%), V143- (85%), ins215AGY (55%)
Costa Rica 21% 14 67
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Mexico 19% 559 2,934
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Costa Rica 16% 11 67
B.1.438.1B.1.438.1 Mutations
ProteinMutations
Spike (non-RBD)D614G, Q675H
Canada 13% 407 3,065
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Canada 12% 383 3,065
B.1.526.2B.1.526.2 Mutations
ProteinMutations
Spike (RBD)S477N
Spike (non-RBD)D253G, D614G, L5F, Q957R, T95I
Puerto Rico 11% 27 249
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage Country Percent Lineage Count Total Count
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Cambodia 93% 200 215
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Sri Lanka 91% 135 149
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Vietnam 84% 72 86
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Singapore 83% 668 805
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Israel 83% 406 492
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Thailand 79% 537 676
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Japan 78% 5,173 6,669
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
India 72% 2,234 3,116
B.1.351.3B.1.351.3 Mutations
ProteinMutations
Spike (RBD)E484K (88%), K417N, N501Y (88%)
Spike (non-RBD)A243- (84%), A701V, D80A (90%), D215G (87%), D614G, L18F (85%), L242- (81%), L244- (81%)
Bangladesh 45% 70 155
B.1B.1 Mutations
ProteinMutations
Spike (non-RBD)D614G
Qatar 43% 92 213
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
South Korea 40% 243 615
B.1.351B.1.351 Mutations
ProteinMutations
Spike (RBD)E484K (84%), K417N (86%), N501Y (84%)
Spike (non-RBD)A243- (81%), A701V, D80A (87%), D215G (86%), D614G, L242- (80%), L244- (80%)
Qatar 37% 79 213
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Indonesia 36% 46 127
B.1.497B.1.497 Mutations
ProteinMutations
Spike (non-RBD)D614G
South Korea 36% 220 615
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Bangladesh 28% 43 155
B.1.466.2B.1.466.2 Mutations
ProteinMutations
Spike (RBD)N439K
Spike (non-RBD)D614G, P681R
Indonesia 20% 26 127
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Vietnam 16% 14 86
R.1R.1 Mutations
ProteinMutations
Spike (RBD)E484K
Spike (non-RBD)D614G, G769V, W152L
Japan 15% 1,031 6,669
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Indonesia 14% 18 127
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Thailand 14% 93 676
B.1.620B.1.620 Mutations
ProteinMutations
Spike (RBD)E484K, S477N
Spike (non-RBD)A243-, D614G, D1118H, H69-, H245Y, L242- (83%), L244-, P26S, P681H, T1027I, V70-, V126A, Y144-
South Korea 11% 70 615
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage Country Percent Lineage Count Total Count
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Australia 36% 135 373
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Australia 25% 95 373
B.1.617.1B.1.617.1 Mutations
ProteinMutations
Spike (RBD)E484Q (75%), L452R (89%)
Spike (non-RBD)D614G, E154K (61%), G142D (57%), P681R, Q1071H (73%)
Australia 18% 68 373
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage Country Percent Lineage Count Total Count
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
French Guiana 84% 80 95
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Curacao 81% 63 78
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Suriname 76% 51 67
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Brazil 63% 2,706 4,263
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Aruba 57% 183 322
B.1.621B.1.621 Mutations
ProteinMutations
Spike (RBD)E484K, N501Y, R346K
Spike (non-RBD)D614G, D950N, P681H, T95I, Y144T (74%), Y145S (71%), ins145N (75%)
Colombia 40% 57 144
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Chile 36% 345 951
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Argentina 35% 103 293
C.37C.37 Mutations
ProteinMutations
Spike (RBD)F490S, L452Q
Spike (non-RBD)D253N (81%), D614G, G75V (90%), G252- (80%), L249- (80%), P251- (80%), R246- (80%), S247- (80%), T76I (90%), T250- (80%), T859N, Y248- (80%)
Chile 33% 315 951
P.4P.4 Mutations
ProteinMutations
Spike (RBD)E484K, N501Y
Spike (non-RBD)D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Brazil 28% 1,180 4,263
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Colombia 25% 36 144
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Ecuador 24% 62 262
B.1.526B.1.526 Mutations
ProteinMutations
Spike (RBD)E484K (80%)
Spike (non-RBD)A701V, D253G, D614G, L5F, T95I
Ecuador 21% 56 262
C.37C.37 Mutations
ProteinMutations
Spike (RBD)F490S, L452Q
Spike (non-RBD)D253N (81%), D614G, G75V (90%), G252- (80%), L249- (80%), P251- (80%), R246- (80%), S247- (80%), T76I (90%), T250- (80%), T859N, Y248- (80%)
Argentina 16% 48 293
B.1.526B.1.526 Mutations
ProteinMutations
Spike (RBD)E484K (80%)
Spike (non-RBD)A701V, D253G, D614G, L5F, T95I
Aruba 15% 49 322
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Aruba 15% 47 322
B.1.526B.1.526 Mutations
ProteinMutations
Spike (RBD)E484K (80%)
Spike (non-RBD)A701V, D253G, D614G, L5F, T95I
Colombia 15% 21 144
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Argentina 13% 38 293
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
French Guiana 12% 11 95
B.1.621B.1.621 Mutations
ProteinMutations
Spike (RBD)E484K, N501Y, R346K
Spike (non-RBD)D614G, D950N, P681H, T95I, Y144T (74%), Y145S (71%), ins145N (75%)
Curacao 10% 8 78
N.5N.5 Mutations
ProteinMutations
Spike (RBD)Q414R
Spike (non-RBD)D614G, G257S (50%), T778I (76%)
Argentina 10% 30 293
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage Country Percent Lineage Count Total Count
B.1.351B.1.351 Mutations
ProteinMutations
Spike (RBD)E484K (84%), K417N (86%), N501Y (84%)
Spike (non-RBD)A243- (81%), A701V, D80A (87%), D215G (86%), D614G, L242- (80%), L244- (80%)
Botswana 92% 96 104
B.1.351B.1.351 Mutations
ProteinMutations
Spike (RBD)E484K (84%), K417N (86%), N501Y (84%)
Spike (non-RBD)A243- (81%), A701V, D80A (87%), D215G (86%), D614G, L242- (80%), L244- (80%)
South Africa 86% 339 395
B.1.351.2B.1.351.2 Mutations
ProteinMutations
Spike (RBD)E484K (85%), K417N, N501Y (87%)
Spike (non-RBD)A243-, A701V, D80A, D215G, D614G, L18F, L242-, L244-
Reunion 71% 59 83
C.36C.36 Mutations
ProteinMutations
Spike (RBD)L452R
Spike (non-RBD)D614G, Q677H, S12F (78%)
Egypt 35% 28 81
B.1.351B.1.351 Mutations
ProteinMutations
Spike (RBD)E484K (84%), K417N (86%), N501Y (84%)
Spike (non-RBD)A243- (81%), A701V, D80A (87%), D215G (86%), D614G, L242- (80%), L244- (80%)
Reunion 28% 23 83
C.36.3C.36.3 Mutations
ProteinMutations
Spike (RBD)L452R, R346S
Spike (non-RBD)A899S, D614G, H69- (75%), Q677H, S12F (90%), V70- (75%), W152R
Egypt 21% 17 81
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage State Percent Lineage Count Total Count
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Louisiana 88% 512 583
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Tennessee 86% 933 1,088
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Nebraska 85% 370 433
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Mississippi 85% 188 222
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
South Dakota 84% 90 107
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Michigan 81% 2,700 3,339
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Minnesota 81% 5,852 7,253
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Georgia 81% 1,047 1,300
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Iowa 80% 140 175
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Colorado 80% 4,093 5,123
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Oklahoma 80% 102 128
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Kentucky 79% 350 443
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Texas 79% 4,251 5,410
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
North Dakota 78% 609 777
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Ohio 77% 1,576 2,052
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Maryland 77% 1,895 2,477
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Alabama 76% 162 212
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Missouri 75% 577 767
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Virginia 74% 1,047 1,409
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Montana 73% 238 325
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Idaho 72% 136 190
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Nevada 71% 309 437
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Utah 70% 828 1,175
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
New Mexico 70% 582 833
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Indiana 69% 1,495 2,153
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Delaware 69% 367 530
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Florida 69% 5,353 7,790
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
South Carolina 69% 411 599
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
District of Columbia 68% 137 200
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Pennsylvania 68% 2,462 3,622
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Wisconsin 67% 1,221 1,834
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Wyoming 66% 345 519
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Arkansas 66% 173 263
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Arizona 65% 1,149 1,759
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Vermont 65% 305 468
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
North Carolina 64% 1,691 2,658
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Kansas 64% 776 1,221
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
West Virginia 61% 869 1,424
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Connecticut 60% 1,123 1,858
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Washington 60% 4,297 7,206
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Illinois 58% 3,116 5,412
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
California 57% 3,690 6,468
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Hawaii 57% 112 198
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Massachusetts 54% 3,420 6,376
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Oregon 53% 903 1,693
B.1.1.519B.1.1.519 Mutations
ProteinMutations
Spike (RBD)T478K
Spike (non-RBD)D614G, P681H, T732A
Alaska 53% 471 890
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
New Jersey 53% 1,229 2,335
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
New Hampshire 53% 367 699
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
New York 51% 2,682 5,267
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Rhode Island 45% 513 1,139
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Maine 39% 335 853
*Criteria: Minimum of 20 samples per state.

Top Emerging* Lineages (Past 12 Weeks)

Lineage Country 2-Week Period Change Previous Support Current Support
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Russia 2021-05-17 23% -> 66% (+43%) 45 / 192 188 / 284
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
United Kingdom 2021-05-17 33% -> 73% (+40%) 4,621 / 13,984 15,466 / 21,223
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Portugal 2021-05-17 4% -> 40% (+36%) 41 / 1,052 17 / 43
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Malta 2021-05-03 39% -> 72% (+33%) 17 / 44 23 / 32
B.1.1.318B.1.1.318 Mutations
ProteinMutations
Spike (RBD)E484K
Spike (non-RBD)D614G, D796H, P681H, T95I, Y144-
Greece 2021-05-17 17% -> 48% (+32%) 199 / 1,197 129 / 266
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Turkey 2021-05-17 1% -> 17% (+16%) 4 / 290 10 / 59
B.1.575B.1.575 Mutations
ProteinMutations
Spike (RBD)S494P
Spike (non-RBD)D614G, P681H, T716I
Spain 2021-05-31 2% -> 17% (+15%) 19 / 1,195 70 / 422
B.1.351B.1.351 Mutations
ProteinMutations
Spike (RBD)E484K (84%), K417N (86%), N501Y (84%)
Spike (non-RBD)A243- (81%), A701V, D80A (87%), D215G (86%), D614G, L242- (80%), L244- (80%)
France 2021-05-31 5% -> 14% (+9%) 100 / 2,172 11 / 81
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Luxembourg 2021-05-17 4% -> 11% (+8%) 24 / 670 25 / 219
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Czechia 2021-05-03 0% -> 6% (+5%) 1 / 480 12 / 218
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Germany 2021-05-31 3% -> 7% (+4%) 230 / 7,964 65 / 913
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Norway 2021-05-03 1% -> 4% (+4%) 5 / 816 34 / 790
B.1.617.1B.1.617.1 Mutations
ProteinMutations
Spike (RBD)E484Q (75%), L452R (89%)
Spike (non-RBD)D614G, E154K (61%), G142D (57%), P681R, Q1071H (73%)
Ireland 2021-05-17 1% -> 5% (+3%) 23 / 1,581 61 / 1,291
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Belgium 2021-05-17 2% -> 5% (+3%) 41 / 2,043 89 / 1,857
B.1B.1 Mutations
ProteinMutations
Spike (non-RBD)D614G
Italy 2021-05-03 1% -> 3% (+2%) 30 / 3,247 55 / 1,629
C.36.3C.36.3 Mutations
ProteinMutations
Spike (RBD)L452R, R346S
Spike (non-RBD)A899S, D614G, H69- (75%), Q677H, S12F (90%), V70- (75%), W152R
Austria 2021-05-03 1% -> 3% (+2%) 4 / 380 14 / 502
B.1.1B.1.1 Mutations
ProteinMutations
Spike (non-RBD)D614G
Poland 2021-05-17 1% -> 3% (+2%) 26 / 2,377 25 / 958
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage Country 2-Week Period Change Previous Support Current Support
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Canada 2021-05-17 10% -> 47% (+38%) 13 / 134 45 / 95
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Mexico 2021-05-17 19% -> 36% (+17%) 243 / 1,281 133 / 369
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Sint Maarten 2021-05-17 77% -> 90% (+13%) 20 / 26 75 / 83
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
United States 2021-05-31 5% -> 15% (+9%) 665 / 12,354 76 / 515
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Costa Rica 2021-05-03 45% -> 55% (+9%) 15 / 33 12 / 22
B.1.526.1B.1.526.1 Mutations
ProteinMutations
Spike (RBD)L452R
Spike (non-RBD)D80G (85%), D614G, D950H, F157S, T859N, Y144- (87%)
Puerto Rico 2021-05-03 1% -> 9% (+8%) 1 / 168 5 / 57
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage Country 2-Week Period Change Previous Support Current Support
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Indonesia 2021-05-31 27% -> 72% (+45%) 7 / 26 18 / 25
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Vietnam 2021-05-03 68% -> 96% (+28%) 25 / 37 45 / 47
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Bangladesh 2021-05-03 9% -> 36% (+27%) 5 / 54 16 / 44
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Japan 2021-05-17 4% -> 30% (+26%) 65 / 1,669 16 / 53
B.1B.1 Mutations
ProteinMutations
Spike (non-RBD)D614G
Qatar 2021-05-03 32% -> 58% (+25%) 38 / 117 34 / 59
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Thailand 2021-05-17 10% -> 30% (+20%) 47 / 488 45 / 151
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Singapore 2021-05-03 64% -> 83% (+19%) 123 / 191 173 / 208
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
India 2021-05-03 66% -> 82% (+16%) 1,357 / 2,047 872 / 1,062
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
South Korea 2021-05-03 36% -> 51% (+15%) 169 / 470 71 / 139
C.37C.37 Mutations
ProteinMutations
Spike (RBD)F490S, L452Q
Spike (non-RBD)D253N (81%), D614G, G75V (90%), G252- (80%), L249- (80%), P251- (80%), R246- (80%), S247- (80%), T76I (90%), T250- (80%), T859N, Y248- (80%)
Israel 2021-05-03 0% -> 11% (+11%) 1 / 336 17 / 156
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage Country 2-Week Period Change Previous Support Current Support
B.1.617.1B.1.617.1 Mutations
ProteinMutations
Spike (RBD)E484Q (75%), L452R (89%)
Spike (non-RBD)D614G, E154K (61%), G142D (57%), P681R, Q1071H (73%)
Australia 2021-05-17 4% -> 48% (+45%) 3 / 83 31 / 64
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage Country 2-Week Period Change Previous Support Current Support
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Chile 2021-05-17 39% -> 61% (+22%) 190 / 486 22 / 36
B.1.621B.1.621 Mutations
ProteinMutations
Spike (RBD)E484K, N501Y, R346K
Spike (non-RBD)D614G, D950N, P681H, T95I, Y144T (74%), Y145S (71%), ins145N (75%)
Curacao 2021-05-03 2% -> 24% (+22%) 1 / 45 6 / 25
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Colombia 2021-05-03 20% -> 35% (+15%) 21 / 104 13 / 37
P.4P.4 Mutations
ProteinMutations
Spike (RBD)E484K, N501Y
Spike (non-RBD)D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Brazil 2021-05-03 20% -> 35% (+15%) 343 / 1,689 429 / 1,221
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Aruba 2021-05-17 11% -> 24% (+13%) 8 / 76 25 / 106
B.1B.1 Mutations
ProteinMutations
Spike (non-RBD)D614G
Ecuador 2021-05-17 2% -> 14% (+13%) 2 / 129 9 / 63
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Argentina 2021-05-03 32% -> 44% (+12%) 72 / 223 31 / 70
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
French Guiana 2021-05-03 8% -> 17% (+9%) 2 / 24 6 / 35
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage Country 2-Week Period Change Previous Support Current Support
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
South Africa 2021-05-03 2% -> 11% (+9%) 5 / 249 15 / 139
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage State 2-Week Period Change Previous Support Current Support
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Kansas 2021-05-31 11% -> 39% (+28%) 29 / 273 30 / 77
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Missouri 2021-05-17 3% -> 29% (+26%) 8 / 270 43 / 147
AY.1AY.1 Mutations
ProteinMutations
Spike (RBD)K417N, L452R, T478K
Spike (non-RBD)D614G, D950N, E156G (78%), F157- (79%), G142D (55%), P681R, R158- (79%), T19R (80%), T95I (55%), W258L (65%)
California 2021-05-31 2% -> 25% (+22%) 21 / 961 13 / 53
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Montana 2021-05-03 57% -> 78% (+21%) 62 / 108 97 / 124
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Rhode Island 2021-05-17 46% -> 64% (+18%) 220 / 481 41 / 64
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
South Dakota 2021-05-03 80% -> 96% (+17%) 59 / 74 27 / 28
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Arkansas 2021-05-17 12% -> 29% (+16%) 13 / 107 10 / 35
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
New Mexico 2021-05-17 68% -> 83% (+15%) 249 / 368 82 / 99
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Mississippi 2021-05-17 79% -> 92% (+14%) 81 / 103 59 / 64
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Colorado 2021-05-17 4% -> 18% (+14%) 92 / 2,138 60 / 337
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Wyoming 2021-05-17 2% -> 15% (+13%) 4 / 194 15 / 97
B.1.526.1B.1.526.1 Mutations
ProteinMutations
Spike (RBD)L452R
Spike (non-RBD)D80G (85%), D614G, D950H, F157S, T859N, Y144- (87%)
Maine 2021-05-17 17% -> 30% (+12%) 50 / 292 39 / 132
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Alaska 2021-05-03 22% -> 34% (+12%) 67 / 307 122 / 358
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Oregon 2021-05-17 13% -> 24% (+11%) 67 / 512 45 / 186
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Alabama 2021-05-03 1% -> 12% (+11%) 1 / 85 9 / 74
B.1.526.2B.1.526.2 Mutations
ProteinMutations
Spike (RBD)S477N
Spike (non-RBD)D253G, D614G, L5F, Q957R, T95I
Vermont 2021-05-03 8% -> 19% (+10%) 19 / 227 39 / 208
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Washington 2021-05-03 57% -> 67% (+10%) 2,098 / 3,704 1,562 / 2,343
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Hawaii 2021-05-03 9% -> 19% (+10%) 14 / 152 7 / 37
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
South Carolina 2021-05-17 65% -> 74% (+9%) 154 / 236 83 / 112
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Utah 2021-05-17 10% -> 19% (+9%) 51 / 521 35 / 188
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
New Hampshire 2021-05-03 48% -> 57% (+9%) 153 / 316 157 / 275
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Kentucky 2021-05-17 4% -> 12% (+8%) 7 / 175 11 / 89
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Tennessee 2021-05-17 5% -> 13% (+8%) 20 / 369 20 / 153
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Ohio 2021-05-17 74% -> 81% (+7%) 449 / 604 199 / 245
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
District of Columbia 2021-05-17 68% -> 75% (+7%) 43 / 63 42 / 56
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Delaware 2021-05-17 6% -> 12% (+7%) 8 / 139 7 / 56
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Nevada 2021-05-17 6% -> 12% (+6%) 7 / 127 15 / 126
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
North Carolina 2021-05-03 60% -> 66% (+6%) 714 / 1,194 650 / 982
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Nebraska 2021-05-17 2% -> 9% (+6%) 3 / 129 8 / 92
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Connecticut 2021-05-17 4% -> 10% (+6%) 25 / 573 24 / 238
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Indiana 2021-05-17 3% -> 8% (+6%) 22 / 864 18 / 223
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
New Jersey 2021-05-17 5% -> 10% (+6%) 30 / 656 36 / 357
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Arizona 2021-05-17 2% -> 7% (+5%) 10 / 547 23 / 318
B.1.526B.1.526 Mutations
ProteinMutations
Spike (RBD)E484K (80%)
Spike (non-RBD)A701V, D253G, D614G, L5F, T95I
Georgia 2021-05-17 3% -> 8% (+5%) 14 / 506 8 / 98
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
New York 2021-05-03 49% -> 55% (+5%) 1,455 / 2,954 921 / 1,686
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Wisconsin 2021-05-17 8% -> 14% (+5%) 44 / 523 22 / 162
B.1.1.7B.1.1.7 Mutations
ProteinMutations
Spike (RBD)N501Y
Spike (non-RBD)A570D, D614G, D1118H, H69-, P681H, S982A, T716I, V70-, Y144-
Pennsylvania 2021-05-03 65% -> 71% (+5%) 1,364 / 2,085 839 / 1,189
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Virginia 2021-05-17 2% -> 7% (+5%) 10 / 487 20 / 305
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
North Dakota 2021-05-17 2% -> 6% (+4%) 5 / 290 6 / 97
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Texas 2021-05-17 3% -> 7% (+4%) 55 / 1,782 56 / 754
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Massachusetts 2021-05-17 3% -> 7% (+4%) 58 / 2,205 50 / 752
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Minnesota 2021-05-03 2% -> 4% (+3%) 84 / 4,524 99 / 2,269
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Florida 2021-05-17 2% -> 4% (+2%) 40 / 2,613 25 / 692
P.1P.1 Mutations
ProteinMutations
Spike (RBD)E484K, K417T, N501Y
Spike (non-RBD)D138Y, D614G, H655Y, L18F, P26S, R190S, T20N, T1027I, V1176F
Louisiana 2021-05-03 1% -> 3% (+2%) 3 / 206 7 / 219
B.1.617.2B.1.617.2 Mutations
ProteinMutations
Spike (RBD)L452R, T478K
Spike (non-RBD)D614G, D950N, E156G, F157-, G142D (64%), P681R, R158-, T19R (84%)
Maryland 2021-05-17 2% -> 3% (+2%) 13 / 791 8 / 240
*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

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Dashboard Timeline

April 16, 2021
08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page
April 16, 2021
08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily
April 05, 2021
03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page
March 23, 2021
06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release
November 13, 2020
04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!
June 15, 2020
12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts
June 04, 2020
08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time
June 02, 2020
12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash
May 26, 2020
12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b
May 11, 2020
12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10
April 27, 2020
12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships
April 03, 2020
12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc
April 02, 2020
10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files
March 31, 2020
12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes
January 10, 2020
12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling



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