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Welcome to the Regeneron COVID-19 Dashboard

This dashboard contains aggregated information on SARS-CoV-2 (hCoV-19) genomes and associated patient metadata, gathered in partnership with the GISAID initiative.

The goal of the dashboard is to enable scientists to understand the evolution of this emerging coronavirus by monitoring and displaying pertinent information. For example, the dashboard displays the novel mutations in SARS-CoV-2 (hCoV-19) genomes across time and geographical location, which facilitates the identification of a mutation that may increase transmission or virulence.

In addition, there is de-identified patient demographic information such as country of origin, patient status, and age, which provides further insights into the populations most susceptible to the virus.

13,471,890

SARS-CoV-2 (hCoV-19) genomes

November 16, 2022

11:51 PM ET

Last data update

Top Lineages Per Country (Past 12 Weeks)

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Lineage WHO Label Country Percent Lineage Count Total Count
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Crimea 76% 62 82
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Russia 62% 3,295 5,305
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Estonia 43% 417 965
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Turkey 37% 881 2,412
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Republic of Serbia 31% 49 158
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bulgaria 29% 65 222
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Romania 26% 153 583
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Finland 26% 212 824
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovakia 24% 312 1,324
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Portugal 22% 374 1,692
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Greece 21% 15 72
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovenia 21% 600 2,887
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Croatia 20% 420 2,057
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 20% 13 64
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 19% 7,541 40,314
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 19% 369 1,978
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovenia 19% 535 2,887
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Switzerland 18% 749 4,084
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Finland 18% 150 824
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iceland 18% 129 710
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Greece 18% 13 72
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 18% 1,239 6,872
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Norway 18% 208 1,154
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Czechia 18% 607 3,416
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Romania 17% 102 583
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Spain 17% 811 4,691
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Republic of Serbia 17% 27 158
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Italy 17% 1,181 6,981
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Austria 17% 747 4,524
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sweden 16% 1,467 9,134
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Croatia 16% 329 2,057
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Portugal 16% 265 1,692
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bulgaria 15% 34 222
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ireland 15% 538 3,563
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 15% 503 3,368
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bulgaria 15% 33 222
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 15% 4,822 32,585
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovakia 15% 194 1,324
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 14% 488 3,368
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Italy 14% 998 6,981
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Austria 14% 646 4,524
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 14% 280 1,978
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 14% 9 64
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Republic of Serbia 14% 22 158
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Croatia 14% 285 2,057
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Romania 14% 80 583
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Finland 14% 113 824
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Turkey 14% 328 2,412
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France 13% 3,141 23,438
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Netherlands 13% 1,075 8,028
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France 13% 3,126 23,438
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Netherlands 13% 1,061 8,028
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United Kingdom 13% 5,297 40,495
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Spain 13% 612 4,691
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Czechia 13% 444 3,416
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovakia 13% 172 1,324
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 13% 5,192 40,314
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 13% 429 3,368
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 13% 5,091 40,314
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ireland 13% 448 3,563
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Greece 12% 9 72
BA.5.1.3BA.5.1.3 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D (88%), S371F (84%), S373P (89%), S375F (88%), T376A (88%), D405N, R408S, K417N, N440K (85%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, V289I, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 12% 8 64
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Italy 12% 872 6,981
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Spain 12% 579 4,691
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Switzerland 12% 497 4,084
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Liechtenstein 12% 18 151
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Netherlands 12% 956 8,028
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sweden 12% 1,087 9,134
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ireland 12% 422 3,563
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 11% 787 6,872
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 11% 3,718 32,585
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 11% 224 1,978
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sweden 11% 1,032 9,134
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Estonia 11% 109 965
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Liechtenstein 11% 17 151
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Greece 11% 8 72
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Czechia 11% 379 3,416
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovenia 11% 320 2,887
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 11% 372 3,368
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 11% 7 64
BA.5.1.23BA.5.1.23 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ukraine 11% 7 64
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 11% 3,563 32,585
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Norway 11% 126 1,154
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France 11% 2,535 23,438
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 11% 3,517 32,585
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 11% 735 6,872
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Portugal 11% 179 1,692
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Switzerland 10% 412 4,084
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Dominican Republic 65% 132 204
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Panama 44% 29 66
BA.5.2.23BA.5.2.23 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N (87%), N440K, V445A, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, Y145H (86%), V213G, S255F, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 23% 190 821
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Puerto Rico 23% 42 186
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Canada 22% 6,634 29,672
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 21% 20 97
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United States 18% 24,842 134,849
BE.1.2BE.1.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Panama 18% 12 66
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mexico 15% 210 1,363
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mexico 15% 210 1,363
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 14% 14 97
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Canada 13% 3,861 29,672
BA.5.5BA.5.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 12% 12 97
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United States 11% 15,423 134,849
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 11% 11 97
BE.1BE.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 11% 11 97
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Puerto Rico 11% 21 186
BE.1BE.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 11% 88 821
BE.1.2.1BE.1.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, V445A, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 11% 88 821
BA.5.2.9BA.5.2.9 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Panama 11% 7 66
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
XBB.1XBB.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T, L368I (86%), S371F, S373P, S375F, T376A, D405N, R408S (87%), K417N (88%), N440K, V445P, G446S, N460K, S477N, T478K, E484A, F486S, F490S, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, V83A, G142D, Y144- (86%), H146Q (89%), Q183E, V213E, G252V (83%), D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bangladesh 68% 91 134
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Thailand 51% 234 461
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Malaysia 48% 698 1,464
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mongolia 46% 44 95
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indonesia 46% 1,505 3,305
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Philippines 40% 156 388
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 40% 61 152
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Korea 40% 3,981 10,044
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron India 40% 1,473 3,727
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pakistan 39% 57 147
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brunei 39% 253 656
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Cambodia 35% 38 108
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 33% 302 913
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kazakhstan 31% 55 177
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Japan 28% 8,036 28,347
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Japan 28% 8,006 28,347
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Korea 27% 2,715 10,044
XBB.1XBB.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T, L368I (86%), S371F, S373P, S375F, T376A, D405N, R408S (87%), K417N (88%), N440K, V445P, G446S, N460K, S477N, T478K, E484A, F486S, F490S, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, V83A, G142D, Y144- (86%), H146Q (89%), Q183E, V213E, G252V (83%), D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Singapore 26% 841 3,227
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Singapore 21% 688 3,227
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Israel 21% 1,613 7,743
BA.5.2.27BA.5.2.27 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (80%), L452R (83%), S477N (84%), T478K (84%), E484A (83%), F486V (84%), Q498R (82%), N501Y (83%), Y505H (83%)
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vietnam 20% 32 163
BA.5.2.34BA.5.2.34 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S (87%), K417N (89%), N440K (86%), L452R (89%), S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Cambodia 19% 20 108
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Japan 18% 5,149 28,347
BM.1.1BM.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H (74%), R346T (78%), S371F (66%), S373P (70%), S375F (70%), T376A (69%), D405N (70%), K417N (53%), N440K (61%), G446S (64%), N460K (66%), S477N (83%), T478K (83%), E484A (82%), F486S (82%), Q498R (85%), N501Y (85%), Y505H (84%)
Spike (non-RBD)T19I (89%), L24- (71%), P25- (70%), P26- (70%), A27S (74%), G142D (57%), I210V (57%), V213G (59%), G257S (65%), D614G, H655Y, N679K, P681H, N764K (84%), D796Y, Q954H, N969K
Omicron Kuwait 17% 11 63
BA.5.2.6BA.5.2.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indonesia 17% 569 3,305
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kazakhstan 17% 30 177
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vietnam 17% 27 163
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kuwait 16% 10 63
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Singapore 15% 468 3,227
BA.2.75.2BA.2.75.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H (79%), R346T (83%), S371F (75%), S373P (79%), S375F (78%), T376A (77%), D405N (81%), R408S (58%), K417N (59%), N440K (60%), G446S (60%), N460K (64%), S477N (81%), T478K (80%), E484A (78%), F486S (81%), Q498R (83%), N501Y (82%), Y505H (83%)
Spike (non-RBD)T19I (87%), L24- (74%), P25- (74%), P26- (75%), A27S (78%), F157L (50%), I210V (63%), V213G (65%), G257S (70%), D614G, H655Y, N679K, P681H, N764K (85%), D796Y, Q954H, N969K, D1199N
Omicron Kuwait 14% 9 63
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 13% 20 152
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brunei 13% 86 656
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brunei 13% 84 656
BQ.1.2BQ.1.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, I666V, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mongolia 13% 12 95
BA.2.3.20BA.2.3.20 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444R, N450D, L452M, N460K, S477N, T478K, E484R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, M153T, N164K, V213G, H245N, G257D, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Philippines 13% 49 388
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Israel 13% 974 7,743
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 12% 109 913
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 12% 18 152
BN.1.3BN.1.3 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H (68%), R346T (82%), K356T (84%), S371F (86%), S373P (85%), S375F (86%), T376A (85%), D405N, R408S (81%), K417N (80%), N440K (75%), G446S (72%), N460K (77%), S477N (85%), T478K (85%), E484A (84%), F490S (84%), Q498R (84%), N501Y (85%), Y505H (84%)
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D (70%), K147E (68%), W152R (78%), F157L (79%), I210V (76%), V213G (79%), G257S (65%), D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vietnam 11% 18 163
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 11% 99 913
BS.1.1BS.1.1 Mutations
ProteinMutations
Spike (RBD)G339D, R346T, K356T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (83%), L452R (83%), N460K (83%), G476S (83%), S477N (83%), T478K (83%), E484A (83%), Q498R (83%), N501Y (83%), Y505H (83%)
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, Y144-, V213N (84%), ins213GEG (84%), G257V (84%), D614G, S640F, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
NA Vietnam 10% 17 163
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vietnam 10% 17 163
BA.2BA.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pakistan 10% 15 147
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Zealand 22% 279 1,244
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Zealand 21% 266 1,244
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Australia 20% 2,891 14,448
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Australia 17% 2,500 14,448
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Australia 11% 1,597 14,448
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Argentina 44% 40 91
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bonaire 37% 26 71
BA.5.3.1BA.5.3.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brazil 32% 267 825
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ecuador 27% 28 105
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brazil 25% 205 825
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 21% 51 239
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ecuador 18% 19 105
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Peru 18% 285 1,598
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Chile 17% 303 1,737
BF.7.6BF.7.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Aruba 17% 17 102
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ecuador 16% 17 105
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Peru 16% 257 1,598
BF.31BF.31 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F (89%), S373P, S375F, T376A, D405N, R408S (89%), K417N (83%), L452R (90%), S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D (70%), V213G, D614G, H655Y, N679K, P681H, N764K (77%), D796Y, Q954H, N969K
Omicron Chile 16% 272 1,737
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Curacao 15% 14 91
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brazil 14% 119 825
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 14% 34 239
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 13% 30 239
BF.10BF.10 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 13% 30 239
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Curacao 12% 11 91
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Chile 12% 209 1,737
BF.7.4.1BF.7.4.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Aruba 11% 11 102
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brazil 10% 86 825
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label Country Percent Lineage Count Total Count
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nigeria 54% 46 85
BA.5.3.1BA.5.3.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Africa 38% 489 1,302
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France (Réunion Island) 25% 131 532
BA.5BA.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Africa 15% 190 1,302
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nigeria 14% 12 85
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France (Réunion Island) 12% 66 532
*Criteria: Above 10%, minimum of 50 samples per country.
Lineage WHO Label State Percent Lineage Count Total Count
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Montana 39% 22 57
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Oklahoma 30% 20 66
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Oregon 27% 300 1,117
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron North Dakota 26% 145 562
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vermont 25% 9 36
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Dakota 23% 54 230
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Alaska 23% 75 325
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron California 23% 5,382 23,612
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron West Virginia 23% 115 509
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kentucky 23% 135 599
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Hampshire 22% 87 390
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ohio 22% 512 2,323
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Mexico 22% 153 703
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Washington 22% 1,265 5,851
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Utah 21% 225 1,047
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nevada 21% 225 1,057
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nebraska 21% 147 698
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iowa 21% 226 1,088
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Missouri 21% 223 1,081
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colorado 20% 708 3,526
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Wisconsin 20% 211 1,058
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kansas 19% 150 774
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Idaho 19% 88 458
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Carolina 19% 192 1,008
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Minnesota 19% 407 2,146
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mississippi 19% 53 280
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Wyoming 19% 26 138
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron District of Columbia 19% 131 697
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Tennessee 19% 101 541
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Texas 19% 1,540 8,277
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron North Carolina 19% 1,316 7,104
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Maine 18% 22 120
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Virginia 18% 670 3,704
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Illinois 18% 987 5,631
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Arkansas 17% 51 296
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Arizona 17% 373 2,182
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hawaii 17% 264 1,549
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Connecticut 17% 482 2,912
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Jersey 17% 1,113 6,737
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Michigan 17% 862 5,220
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Maryland 16% 517 3,151
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Delaware 16% 182 1,118
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Rhode Island 16% 187 1,163
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Louisiana 16% 141 894
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pennsylvania 16% 750 4,764
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Florida 15% 640 4,258
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New York 15% 2,375 16,216
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indiana 15% 194 1,331
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Alabama 14% 36 249
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Massachusetts 14% 499 3,521
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 12% 262 2,103
*Criteria: Minimum of 20 samples per state.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Turkey 2022-10-31 1% -> 32% (+30%) 18 / 1,236 52 / 163
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ireland 2022-10-31 6% -> 36% (+30%) 18 / 281 18 / 50
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bulgaria 2022-10-17 25% -> 50% (+25%) 25 / 100 19 / 38
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iceland 2022-10-31 10% -> 35% (+24%) 19 / 181 34 / 98
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Spain 2022-10-31 17% -> 39% (+22%) 161 / 926 58 / 149
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Switzerland 2022-10-31 7% -> 28% (+21%) 53 / 749 25 / 89
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Belgium 2022-10-31 7% -> 25% (+18%) 69 / 980 30 / 120
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Italy 2022-10-31 6% -> 23% (+17%) 87 / 1,459 142 / 631
BA.2BA.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Germany 2022-10-31 0% -> 15% (+15%) 22 / 6,491 136 / 898
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Liechtenstein 2022-10-03 7% -> 21% (+14%) 3 / 42 6 / 29
BA.5.1.26BA.5.1.26 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F (90%), S373P, S375F, T376A, D405N, R408S (86%), K417N, N440K (88%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Poland 2022-10-31 0% -> 13% (+12%) 1 / 259 6 / 47
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France 2022-10-17 14% -> 25% (+11%) 967 / 7,060 915 / 3,715
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Norway 2022-10-17 2% -> 12% (+10%) 6 / 306 13 / 105
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Portugal 2022-10-17 5% -> 15% (+10%) 16 / 351 34 / 233
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United Kingdom 2022-10-31 8% -> 17% (+9%) 727 / 9,248 339 / 1,995
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Croatia 2022-10-17 1% -> 9% (+8%) 5 / 472 24 / 271
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Czechia 2022-10-17 18% -> 25% (+8%) 127 / 714 38 / 150
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Finland 2022-09-19 11% -> 18% (+7%) 24 / 228 41 / 229
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovakia 2022-10-17 4% -> 11% (+7%) 12 / 307 5 / 46
CM.2CM.2 Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444R, N450D, L452M, N460K, S477N, T478K, E484R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, M153T, N164K, V213G, H245N, G257D, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
NA Austria 2022-10-03 3% -> 9% (+7%) 26 / 986 99 / 1,076
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Netherlands 2022-10-17 4% -> 10% (+7%) 84 / 2,125 186 / 1,773
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Sweden 2022-10-31 6% -> 12% (+6%) 114 / 1,976 72 / 603
BE.1.1BE.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), L452R, S477N, T478K, E484A, F486V, Q498R (90%), N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Denmark 2022-10-31 1% -> 7% (+6%) 90 / 6,900 266 / 3,661
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Slovenia 2022-10-17 1% -> 6% (+6%) 4 / 682 27 / 434
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Russia 2022-09-19 60% -> 65% (+5%) 1,571 / 2,635 1,128 / 1,740
BF.14BF.14 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, N450D, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Republic of Serbia 2022-09-19 5% -> 10% (+5%) 5 / 107 5 / 51
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Luxembourg 2022-10-03 11% -> 16% (+5%) 109 / 974 185 / 1,136
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Estonia 2022-09-19 4% -> 7% (+4%) 13 / 351 28 / 376
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Romania 2022-10-03 3% -> 6% (+4%) 4 / 148 9 / 145
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.5.5BA.5.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Guatemala 2022-09-19 8% -> 27% (+19%) 2 / 25 8 / 30
BA.5.2.23BA.5.2.23 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (90%), K417N (87%), N440K, V445A, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, Y145H (86%), V213G, S255F, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Costa Rica 2022-09-19 8% -> 26% (+18%) 15 / 200 57 / 221
BA.5.2.9BA.5.2.9 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Panama 2022-09-19 3% -> 19% (+16%) 1 / 35 6 / 31
BW.1BW.1 Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K (90%), S477N, T478K, E484A, F486V (84%), Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, Y144- (65%), V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
NA Mexico 2022-10-03 3% -> 16% (+13%) 15 / 464 40 / 253
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Dominican Republic 2022-10-17 2% -> 15% (+12%) 1 / 42 5 / 34
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Puerto Rico 2022-10-03 20% -> 28% (+8%) 7 / 35 23 / 83
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron United States 2022-10-17 2% -> 7% (+4%) 587 / 26,939 1,308 / 19,822
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Canada 2022-10-17 1% -> 4% (+3%) 91 / 7,601 269 / 6,226
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
XBB.1XBB.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T, L368I (86%), S371F, S373P, S375F, T376A, D405N, R408S (87%), K417N (88%), N440K, V445P, G446S, N460K, S477N, T478K, E484A, F486S, F490S, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, V83A, G142D, Y144- (86%), H146Q (89%), Q183E, V213E, G252V (83%), D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Bangladesh 2022-09-19 25% -> 81% (+56%) 8 / 32 55 / 68
BN.1.3BN.1.3 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H (68%), R346T (82%), K356T (84%), S371F (86%), S373P (85%), S375F (86%), T376A (85%), D405N, R408S (81%), K417N (80%), N440K (75%), G446S (72%), N460K (77%), S477N (85%), T478K (85%), E484A (84%), F490S (84%), Q498R (84%), N501Y (85%), Y505H (84%)
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D (70%), K147E (68%), W152R (78%), F157L (79%), I210V (76%), V213G (79%), G257S (65%), D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Vietnam 2022-10-03 6% -> 44% (+38%) 2 / 33 15 / 34
XBBXBB (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T, L368I, S371F, S373P, S375F, T376A (90%), D405N, R408S (86%), K417N (86%), N440K, V445P, G446S, N460K, S477N, T478K, E484A, F486S, F490S, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, V83A, G142D, Y144-, H146Q, Q183E, V213E, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Singapore 2022-10-31 12% -> 38% (+26%) 81 / 697 130 / 345
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pakistan 2022-09-19 36% -> 54% (+18%) 34 / 95 22 / 41
BA.2.3.20BA.2.3.20 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444R, N450D, L452M, N460K, S477N, T478K, E484R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, M153T, N164K, V213G, H245N, G257D, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Philippines 2022-09-19 5% -> 22% (+17%) 11 / 231 32 / 148
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 2022-10-03 32% -> 49% (+17%) 11 / 34 23 / 47
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hong Kong 2022-10-17 4% -> 20% (+16%) 7 / 171 6 / 30
XBBXBB (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T, L368I, S371F, S373P, S375F, T376A (90%), D405N, R408S (86%), K417N (86%), N440K, V445P, G446S, N460K, S477N, T478K, E484A, F486S, F490S, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, V83A, G142D, Y144-, H146Q, Q183E, V213E, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron India 2022-10-17 14% -> 28% (+14%) 105 / 759 44 / 157
XBBXBB (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T, L368I, S371F, S373P, S375F, T376A (90%), D405N, R408S (86%), K417N (86%), N440K, V445P, G446S, N460K, S477N, T478K, E484A, F486S, F490S, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, V83A, G142D, Y144-, H146Q, Q183E, V213E, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Malaysia 2022-10-31 13% -> 27% (+14%) 23 / 182 23 / 86
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Cambodia 2022-09-19 35% -> 47% (+12%) 14 / 40 16 / 34
BM.1.1BM.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H (74%), R346T (78%), S371F (66%), S373P (70%), S375F (70%), T376A (69%), D405N (70%), K417N (53%), N440K (61%), G446S (64%), N460K (66%), S477N (83%), T478K (83%), E484A (82%), F486S (82%), Q498R (85%), N501Y (85%), Y505H (84%)
Spike (non-RBD)T19I (89%), L24- (71%), P25- (70%), P26- (70%), A27S (74%), G142D (57%), I210V (57%), V213G (59%), G257S (65%), D614G, H655Y, N679K, P681H, N764K (84%), D796Y, Q954H, N969K
Omicron Kuwait 2022-10-03 12% -> 23% (+10%) 4 / 32 7 / 31
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brunei 2022-10-17 15% -> 25% (+10%) 27 / 183 30 / 122
BA.5.2.6BA.5.2.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indonesia 2022-09-19 8% -> 18% (+10%) 75 / 917 144 / 802
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Thailand 2022-10-03 6% -> 14% (+8%) 11 / 192 9 / 65
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Israel 2022-10-17 5% -> 11% (+6%) 83 / 1,563 170 / 1,510
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Korea 2022-09-19 2% -> 5% (+3%) 49 / 2,740 132 / 2,760
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Australia 2022-10-31 16% -> 26% (+10%) 540 / 3,418 323 / 1,236
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Zealand 2022-10-03 4% -> 7% (+4%) 15 / 415 5 / 67
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.5.3.1BA.5.3.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S (89%), K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Brazil 2022-10-03 11% -> 62% (+51%) 13 / 120 79 / 128
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Curacao 2022-09-19 10% -> 24% (+14%) 3 / 30 6 / 25
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Trinidad And Tobago 2022-10-17 29% -> 39% (+11%) 14 / 49 13 / 33
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Peru 2022-10-03 17% -> 28% (+11%) 87 / 515 37 / 134
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Aruba 2022-10-17 5% -> 16% (+10%) 2 / 37 5 / 32
BA.2BA.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (85%), S477N, T478K, E484A, Q493R, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Chile 2022-10-17 0% -> 7% (+7%) 1 / 476 15 / 211
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Argentina 2022-09-19 46% -> 52% (+7%) 21 / 46 11 / 21
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label Country 2-Week Period Change Previous Support Current Support
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron France (Réunion Island) 2022-09-19 9% -> 17% (+9%) 40 / 468 11 / 64
BA.5.3BA.5.3 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (83%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Africa 2022-10-17 0% -> 9% (+8%) 1 / 314 25 / 288
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nigeria 2022-09-19 12% -> 19% (+7%) 5 / 42 5 / 27
*Criteria: >= +5% or >= 2x fold change between 2 week periods with >= 20 samples.
Lineage WHO Label State 2-Week Period Change Previous Support Current Support
BF.10BF.10 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Arkansas 2022-10-03 2% -> 31% (+28%) 2 / 94 11 / 36
BQ.1.12BQ.1.12 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Mexico 2022-10-31 4% -> 30% (+26%) 8 / 179 19 / 63
BF.10BF.10 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Louisiana 2022-10-31 7% -> 28% (+21%) 7 / 105 17 / 61
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kentucky 2022-10-03 20% -> 38% (+18%) 33 / 166 35 / 92
BA.5.1.6BA.5.1.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (84%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Arizona 2022-10-31 14% -> 29% (+15%) 71 / 495 68 / 231
BF.5BF.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K, A1020S
Omicron Maine 2022-09-19 5% -> 19% (+14%) 2 / 44 11 / 59
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Rhode Island 2022-10-17 1% -> 15% (+14%) 3 / 273 8 / 53
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Alaska 2022-10-17 12% -> 25% (+13%) 5 / 42 6 / 24
BA.5.9BA.5.9 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346I, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (86%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Idaho 2022-10-17 2% -> 15% (+13%) 2 / 98 13 / 87
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New York 2022-10-31 12% -> 25% (+13%) 308 / 2,606 185 / 751
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Ohio 2022-10-31 3% -> 15% (+12%) 12 / 428 5 / 33
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Colorado 2022-10-31 5% -> 17% (+12%) 23 / 431 5 / 29
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Hampshire 2022-09-19 17% -> 28% (+12%) 26 / 157 34 / 120
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Dakota 2022-09-19 20% -> 31% (+11%) 21 / 103 14 / 45
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron District of Columbia 2022-10-31 8% -> 18% (+11%) 9 / 119 6 / 33
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Alabama 2022-10-03 19% -> 29% (+10%) 13 / 68 10 / 34
BA.5.2.3BA.5.2.3 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron North Dakota 2022-09-19 1% -> 11% (+10%) 2 / 171 19 / 174
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Tennessee 2022-10-03 8% -> 18% (+10%) 15 / 177 12 / 66
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Texas 2022-10-31 7% -> 16% (+10%) 43 / 659 6 / 37
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nebraska 2022-10-31 13% -> 23% (+9%) 21 / 157 7 / 31
BA.4.6BA.4.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N658S, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Mississippi 2022-09-19 15% -> 24% (+9%) 23 / 151 28 / 115
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron West Virginia 2022-10-03 11% -> 20% (+9%) 14 / 132 14 / 71
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron New Jersey 2022-10-17 9% -> 18% (+9%) 123 / 1,423 140 / 798
BA.5.1BA.5.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Oregon 2022-10-17 4% -> 11% (+7%) 10 / 261 10 / 94
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Florida 2022-10-17 2% -> 9% (+6%) 15 / 652 43 / 489
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Pennsylvania 2022-10-17 1% -> 7% (+6%) 11 / 976 59 / 790
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Nevada 2022-10-17 2% -> 8% (+6%) 4 / 229 27 / 334
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron South Carolina 2022-10-17 14% -> 20% (+6%) 17 / 124 39 / 195
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Georgia 2022-10-17 1% -> 8% (+6%) 5 / 335 29 / 373
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Maryland 2022-10-17 4% -> 10% (+6%) 26 / 680 70 / 695
BA.5.2BA.5.2 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Kansas 2022-10-17 11% -> 17% (+6%) 12 / 112 28 / 166
BA.5.2.1BA.5.2.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Iowa 2022-10-17 18% -> 24% (+6%) 37 / 205 63 / 261
BA.5.2.6BA.5.2.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Massachusetts 2022-10-17 1% -> 7% (+6%) 11 / 929 40 / 565
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Indiana 2022-10-17 0% -> 6% (+6%) 1 / 266 17 / 277
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Virginia 2022-10-31 7% -> 12% (+5%) 31 / 456 13 / 106
BA.2.75BA.2.75 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339H, R346T (53%), S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, G446S, N460K, S477N, T478K, E484A, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24- (86%), P25- (86%), P26- (86%), A27S (87%), G142D (84%), K147E, W152R, F157L, I210V, V213G, G257S, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Wisconsin 2022-10-17 1% -> 7% (+5%) 3 / 226 14 / 210
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Connecticut 2022-10-17 2% -> 7% (+5%) 14 / 682 26 / 360
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Washington 2022-10-31 3% -> 7% (+5%) 26 / 958 23 / 311
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron California 2022-10-17 1% -> 6% (+5%) 57 / 4,249 156 / 2,597
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Delaware 2022-10-17 1% -> 6% (+5%) 4 / 270 6 / 100
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Illinois 2022-10-17 1% -> 5% (+4%) 8 / 1,060 59 / 1,165
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Hawaii 2022-10-17 4% -> 8% (+4%) 14 / 382 26 / 337
BQ.1.1BQ.1.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron North Carolina 2022-10-17 1% -> 5% (+4%) 16 / 1,232 51 / 1,004
BA.5.6BA.5.6 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (89%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Utah 2022-10-03 2% -> 5% (+4%) 4 / 252 6 / 116
BF.7BF.7 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, R346T, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Michigan 2022-10-17 3% -> 6% (+3%) 34 / 1,218 58 / 982
BQ.1BQ.1 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K, K444T, L452R, N460K, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Missouri 2022-10-17 1% -> 4% (+3%) 1 / 156 7 / 193
BA.5.5BA.5.5 (Omicron) Mutations
ProteinMutations
Spike (RBD)G339D, S371F, S373P, S375F, T376A, D405N, R408S, K417N, N440K (90%), L452R, S477N, T478K, E484A, F486V, Q498R, N501Y, Y505H
Spike (non-RBD)T19I, L24-, P25-, P26-, A27S, H69-, V70-, T76I, G142D, V213G, D614G, H655Y, N679K, P681H, N764K, D796Y, Q954H, N969K
Omicron Minnesota 2022-10-17 1% -> 3% (+2%) 4 / 530 9 / 286
*Criteria: >= +5% or >= 2x fold change between 2-week periods with >= 20 samples.

Data Timeline

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Dashboard Timeline

November 02, 2022
06:00PM

New emerging mutations graph and improved performance

Added plot to track emerging mutations. Significantly sped up common plots with an application-level cache
August 02, 2022
07:00PM

Cache loading updated

Modified cache loading logic to avoid incomplete loading of cache
July 26, 2022
08:00PM

QC pipeline updated

Began filtering out genomes <= 25kb in length and >30% undetermined bases, and began re-calling undetermined lineages
January 07, 2022
04:30PM

Top/emerging variant graphs updated

Added overlays and country-specific information to variant graphs
November 27, 2021
01:30PM

WHO Labels Updated

Added Omicron WHO variant
November 18, 2021
04:30PM

Dashboard UI/graphs updated

Added WHO labels to lineages
April 16, 2021
08:50PM

Dashboard UI/graphs updated

Added emerging lineages tracking and top lineages tracking per US state to home page
April 16, 2021
08:00PM

Dashboard backend pipeline overhauled

Overhauled backend pipeline to automatically download and QC data from GISAID daily
April 05, 2021
03:30PM

Dashboard UI/graphs updated

Added top and emerging lineage maps and graphs. Overhauled home page
March 23, 2021
06:00PM

Dashboard performance overhauled

Added caching and refactored all graphs for performance before public release
November 13, 2020
04:00PM

Dashboard UI/graphs updated

Broad-scale update across the entire dashboard to prepare for its launch onto the world wide web!
June 15, 2020
12:00AM

Dashboard graphs upgraded

Migrated dashboard graphs from Plotly to ECharts
June 04, 2020
08:06PM

Dashboard data source changed

Upgraded dashboard to use a database vs flat files. 3x reduction in load time
June 02, 2020
12:18PM

Dashboard UI upgraded

Overhauled dashboard user interface to use bs4dash
May 26, 2020
12:00AM

Variant tracking expanded

Began tracking variants in genes ORF1a and ORF1b
May 11, 2020
12:00AM

Variant tracking expanded

Began tracking variants in genes E, M, N, ORF3a, ORF7a, ORF8, and ORF10
April 27, 2020
12:00AM

Phylogenetic analysis added

Added tab containing viral genome evolutionary relationships
April 03, 2020
12:00AM

Automated QC pipeline created

Cleans up metadata fields such as age, collection date, gender, etc
April 02, 2020
10:36AM

First version of dashboard created

Created first version with shinydashboard. Data is ingested from flat files
March 31, 2020
12:00AM

Patient metadata tracking started

Began downloading patient metadata for all genomes
January 10, 2020
12:00AM

First data downloaded

Began downloading genomes from GISAID and subsequent variant calling
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